Diverse Bacteria Utilize Alginate Within the Microbiome of the Giant Kelp Macrocystis pyrifera
Published 2018 View Full Article
- Home
- Publications
- Publication Search
- Publication Details
Title
Diverse Bacteria Utilize Alginate Within the Microbiome of the Giant Kelp Macrocystis pyrifera
Authors
Keywords
-
Journal
Frontiers in Microbiology
Volume 9, Issue -, Pages -
Publisher
Frontiers Media SA
Online
2018-08-20
DOI
10.3389/fmicb.2018.01914
References
Ask authors/readers for more resources
Related references
Note: Only part of the references are listed.- Structural and biochemical characterization of a multidomain alginate lyase reveals a novel role of CBM32 in CAZymes
- (2018) Qianqian Lyu et al. BIOCHIMICA ET BIOPHYSICA ACTA-GENERAL SUBJECTS
- Incubation with macroalgae induces large shifts in water column microbiota, but minor changes to the epibiota of co-occurring macroalgae
- (2018) Melissa Y. Chen et al. MOLECULAR ECOLOGY
- Sympatric kelp species share a large portion of their surface bacterial communities
- (2017) Matthew A. Lemay et al. ENVIRONMENTAL MICROBIOLOGY
- Genetic analyses unravel the crucial role of a horizontally acquired alginate lyase for brown algal biomass degradation by Z obellia galactanivorans
- (2017) Yongtao Zhu et al. ENVIRONMENTAL MICROBIOLOGY
- Novel Molecular Insights into the Catalytic Mechanism of Marine Bacterial Alginate Lyase AlyGC from Polysaccharide Lyase Family 6
- (2017) Fei Xu et al. JOURNAL OF BIOLOGICAL CHEMISTRY
- Complete genome sequence of Maribacter sp. T28, a polysaccharide-degrading marine flavobacteria
- (2017) Peiwen Zhan et al. JOURNAL OF BIOTECHNOLOGY
- The role of alginate lyases in the enzymatic saccharification of brown macroalgae, Macrocystis pyrifera and Saccharina latissima
- (2017) María Cristina Ravanal et al. Algal Research-Biomass Biofuels and Bioproducts
- Untangling Genomes of Novel Planctomycetal and Verrucomicrobial Species from Monterey Bay Kelp Forest Metagenomes by Refined Binning
- (2017) John Vollmers et al. Frontiers in Microbiology
- Functional and Structural Studies of a Multidomain Alginate Lyase from Persicobacter sp. CCB-QB2
- (2017) Pei-Fang Sim et al. Scientific Reports
- Partitioning of functional and taxonomic diversity in surface-associated microbial communities
- (2016) Alexandra J. Roth-Schulze et al. ENVIRONMENTAL MICROBIOLOGY
- Bacterial community structure and predicted alginate metabolic pathway in an alginate-degrading bacterial consortium
- (2016) Akihisa Kita et al. JOURNAL OF BIOSCIENCE AND BIOENGINEERING
- Enzymatic Hydrolysis of Alginate to Produce Oligosaccharides by a New Purified Endo-Type Alginate Lyase
- (2016) Benwei Zhu et al. Marine Drugs
- Marine Microbiological Enzymes: Studies with Multiple Strategies and Prospects
- (2016) Yan Wang et al. Marine Drugs
- Adaptive radiation by waves of gene transfer leads to fine-scale resource partitioning in marine microbes
- (2016) Jan-Hendrik Hehemann et al. Nature Communications
- ggtree: anrpackage for visualization and annotation of phylogenetic trees with their covariates and other associated data
- (2016) Guangchuang Yu et al. Methods in Ecology and Evolution
- Coastal connectivity and spatial subsidy from a microbial perspective
- (2016) Christin Säwström et al. Ecology and Evolution
- Comparison of different types of pretreatment and enzymatic saccharification of Macrocystis pyrifera for the production of biofuel
- (2016) María Cristina Ravanal et al. Algal Research-Biomass Biofuels and Bioproducts
- Recurring patterns in bacterioplankton dynamics during coastal spring algae blooms
- (2016) Hanno Teeling et al. eLife
- VSEARCH: a versatile open source tool for metagenomics
- (2016) Torbjørn Rognes et al. PeerJ
- Novel Alginate Lyase (Aly5) from a Polysaccharide-Degrading Marine Bacterium, Flammeovirga sp. Strain MY04: Effects of Module Truncation on Biochemical Characteristics, Alginate Degradation Patterns, and Oligosaccharide-Yielding Properties
- (2015) Wenjun Han et al. APPLIED AND ENVIRONMENTAL MICROBIOLOGY
- Temporal fluctuation in the abundance of alginate-degrading bacteria in the gut of abalone Haliotis gigantea over 1 year
- (2015) Reiji Tanaka et al. AQUACULTURE RESEARCH
- MetaPathways v2.5: quantitative functional, taxonomic and usability improvements: Fig. 1.
- (2015) Kishori M. Konwar et al. BIOINFORMATICS
- Kelp forest size alters microbial community structure and function on Vancouver Island, Canada
- (2015) J. L. Clasen et al. ECOLOGY
- Continental-scale variation in seaweed host-associated bacterial communities is a function of host condition, not geography
- (2015) Ezequiel M. Marzinelli et al. ENVIRONMENTAL MICROBIOLOGY
- Patterns and controls of reef-scale production of dissolved organic carbon by giant kelpMacrocystis pyrifera
- (2015) Daniel C. Reed et al. LIMNOLOGY AND OCEANOGRAPHY
- The Cultivable Surface Microbiota of the Brown Alga Ascophyllum nodosum is Enriched in Macroalgal-Polysaccharide-Degrading Bacteria
- (2015) Marjolaine Martin et al. Frontiers in Microbiology
- Comparative Biochemical Characterization of Three Exolytic Oligoalginate Lyases from Vibrio splendidus Reveals Complementary Substrate Scope, Temperature, and pH Adaptations
- (2014) Sujit Sadashiv Jagtap et al. APPLIED AND ENVIRONMENTAL MICROBIOLOGY
- RAxML version 8: a tool for phylogenetic analysis and post-analysis of large phylogenies
- (2014) Alexandros Stamatakis BIOINFORMATICS
- A comparison of plate assay methods for detecting extracellular cellulase and xylanase activity
- (2014) Fatma Meddeb-Mouelhi et al. ENZYME AND MICROBIAL TECHNOLOGY
- Seaweed-microbial interactions: key functions of seaweed-associated bacteria
- (2014) Ravindra Pal Singh et al. FEMS MICROBIOLOGY ECOLOGY
- Minimum entropy decomposition: Unsupervised oligotyping for sensitive partitioning of high-throughput marker gene sequences
- (2014) A Murat Eren et al. ISME Journal
- The Genome of the Alga-Associated Marine Flavobacterium Formosa agariphila KMM 3901TReveals a Broad Potential for Degradation of Algal Polysaccharides
- (2013) Alexander J. Mann et al. APPLIED AND ENVIRONMENTAL MICROBIOLOGY
- Transcriptomic analysis of metabolic function in the giant kelp,Macrocystis pyrifera, across depth and season
- (2013) Talina Konotchick et al. NEW PHYTOLOGIST
- The carbohydrate-active enzymes database (CAZy) in 2013
- (2013) Vincent Lombard et al. NUCLEIC ACIDS RESEARCH
- The Ecology of Microbial Communities Associated with Macrocystis pyrifera
- (2013) Vanessa K. Michelou et al. PLoS One
- Oligotyping: differentiating between closely related microbial taxa using 16S rRNA gene data
- (2013) A. Murat Eren et al. Methods in Ecology and Evolution
- SINA: Accurate high-throughput multiple sequence alignment of ribosomal RNA genes
- (2012) Elmar Pruesse et al. BIOINFORMATICS
- Characterization of the first alginolytic operons in a marine bacterium: from their emergence in marine Flavobacteriia to their independent transfers to marine Proteobacteria and human gut Bacteroides
- (2012) François Thomas et al. ENVIRONMENTAL MICROBIOLOGY
- Bacterial diversity in relation to secondary production and succession on surfaces of the kelp Laminaria hyperborea
- (2012) Mia M Bengtsson et al. ISME Journal
- Phylogenetic conservatism of functional traits in microorganisms
- (2012) Adam C Martiny et al. ISME Journal
- Ultra-high-throughput microbial community analysis on the Illumina HiSeq and MiSeq platforms
- (2012) J Gregory Caporaso et al. ISME Journal
- Cultivable Alginate Lyase-Excreting Bacteria Associated with the Arctic Brown Alga Laminaria
- (2012) Sheng Dong et al. Marine Drugs
- Production and fate of kelp detritus
- (2012) KA Krumhansl et al. MARINE ECOLOGY PROGRESS SERIES
- The SILVA ribosomal RNA gene database project: improved data processing and web-based tools
- (2012) Christian Quast et al. NUCLEIC ACIDS RESEARCH
- An Engineered Microbial Platform for Direct Biofuel Production from Brown Macroalgae
- (2012) A. J. Wargacki et al. SCIENCE
- The Second Skin: Ecological Role of Epibiotic Biofilms on Marine Organisms
- (2012) Martin Wahl et al. Frontiers in Microbiology
- Alginate lyase: Structure, property, and application
- (2011) Hee Sook Kim et al. BIOTECHNOLOGY AND BIOPROCESS ENGINEERING
- Planctomycetes diversity associated with macroalgae
- (2011) Olga Maria Lage et al. FEMS MICROBIOLOGY ECOLOGY
- Cellulose-degrading bacteria associated with the invasive woodwasp Sirex noctilio
- (2011) Aaron S Adams et al. ISME Journal
- Beyond the bacterium: planctomycetes challenge our concepts of microbial structure and function
- (2011) John A. Fuerst et al. NATURE REVIEWS MICROBIOLOGY
- Performance, Accuracy, and Web Server for Evolutionary Placement of Short Sequence Reads under Maximum Likelihood
- (2011) Simon A. Berger et al. SYSTEMATIC BIOLOGY
- Utilization of kelp-derived carbon sources by kelp surface-associated bacteria
- (2010) MM Bengtsson et al. AQUATIC MICROBIAL ECOLOGY
- Search and clustering orders of magnitude faster than BLAST
- (2010) Robert C. Edgar BIOINFORMATICS
- Planctomycetes dominate biofilms on surfaces of the kelp Laminaria hyperborea
- (2010) Mia M Bengtsson et al. BMC MICROBIOLOGY
- Composition, uniqueness and variability of the epiphytic bacterial community of the green alga Ulva australis
- (2010) Catherine Burke et al. ISME Journal
- QIIME allows analysis of high-throughput community sequencing data
- (2010) J Gregory Caporaso et al. NATURE METHODS
- Microbial production of recalcitrant dissolved organic matter: long-term carbon storage in the global ocean
- (2010) Nianzhi Jiao et al. NATURE REVIEWS MICROBIOLOGY
- The cell wall polysaccharide metabolism of the brown alga Ectocarpus siliculosus. Insights into the evolution of extracellular matrix polysaccharides in Eukaryotes
- (2010) Gurvan Michel et al. NEW PHYTOLOGIST
- FastTree 2 – Approximately Maximum-Likelihood Trees for Large Alignments
- (2010) Morgan N. Price et al. PLoS One
- High Frequency of Horizontal Gene Transfer in the Oceans
- (2010) L. D. McDaniel et al. SCIENCE
- Identification of Carbohydrate Metabolism Genes in the Metagenome of a Marine Biofilm Community Shown to Be Dominated by Gammaproteobacteria and Bacteroidetes
- (2010) Jennifer L. Edwards et al. Genes
- Analysis of extracellular alginate lyase and its gene from a marine bacterial strain, Pseudoalteromonas atlantica AR06
- (2009) Ryoji Matsushima et al. APPLIED MICROBIOLOGY AND BIOTECHNOLOGY
- Specific epibacterial communities on macroalgae: phylogeny matters more than habitat
- (2009) T Lachnit et al. Aquatic Biology
- PyNAST: a flexible tool for aligning sequences to a template alignment
- (2009) J. G. Caporaso et al. BIOINFORMATICS
- BLAST+: architecture and applications
- (2009) Christiam Camacho et al. BMC BIOINFORMATICS
- Environmental, genomic and taxonomic perspectives on methanotrophicVerrucomicrobia
- (2009) Huub J. M. Op den Camp et al. Environmental Microbiology Reports
- BIOMASS RATHER THAN GROWTH RATE DETERMINES VARIATION IN NET PRIMARY PRODUCTION BY GIANT KELP
- (2008) Daniel C. Reed et al. ECOLOGY
- Phylogenetic analysis of bacteria associated with Laminaria saccharina
- (2008) Tim Staufenberger et al. FEMS MICROBIOLOGY ECOLOGY
Find the ideal target journal for your manuscript
Explore over 38,000 international journals covering a vast array of academic fields.
SearchAsk a Question. Answer a Question.
Quickly pose questions to the entire community. Debate answers and get clarity on the most important issues facing researchers.
Get Started