Untangling Genomes of Novel Planctomycetal and Verrucomicrobial Species from Monterey Bay Kelp Forest Metagenomes by Refined Binning
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Title
Untangling Genomes of Novel Planctomycetal and Verrucomicrobial Species from Monterey Bay Kelp Forest Metagenomes by Refined Binning
Authors
Keywords
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Journal
Frontiers in Microbiology
Volume 8, Issue -, Pages -
Publisher
Frontiers Media SA
Online
2017-03-29
DOI
10.3389/fmicb.2017.00472
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Note: Only part of the references are listed.- Characterization of the first cultured representative of Verrucomicrobia subdivision 5 indicates the proposal of a novel phylum
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- (2014) T. Seemann BIOINFORMATICS
- Trimmomatic: a flexible trimmer for Illumina sequence data
- (2014) Anthony M. Bolger et al. BIOINFORMATICS
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- (2013) Christian Rinke et al. NATURE
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- (2013) Mads Albertsen et al. NATURE BIOTECHNOLOGY
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- (2013) Vanessa K. Michelou et al. PLoS One
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- (2012) S. Hahnke et al. INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY
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- (2012) Carl-Eric Wegner et al. Marine Genomics
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- The SILVA ribosomal RNA gene database project: improved data processing and web-based tools
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- DECIPHER, a Search-Based Approach to Chimera Identification for 16S rRNA Sequences
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- Generation of Multimillion-Sequence 16S rRNA Gene Libraries from Complex Microbial Communities by Assembling Paired-End Illumina Reads
- (2011) Andrea K. Bartram et al. APPLIED AND ENVIRONMENTAL MICROBIOLOGY
- FLASH: fast length adjustment of short reads to improve genome assemblies
- (2011) T. Magoc et al. BIOINFORMATICS
- Proteinortho: Detection of (Co-)orthologs in large-scale analysis
- (2011) Marcus Lechner et al. BMC BIOINFORMATICS
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- (2011) Brian D Ondov et al. BMC BIOINFORMATICS
- Novel classes of antibiotics or more of the same?
- (2011) Anthony RM Coates et al. BRITISH JOURNAL OF PHARMACOLOGY
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- (2011) Olga Maria Lage et al. FEMS MICROBIOLOGY ECOLOGY
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- (2011) Joseph Alexander Christie-Oleza et al. MOLECULAR & CELLULAR PROTEOMICS
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- (2010) Mia M Bengtsson et al. BMC MICROBIOLOGY
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- (2010) F Goecke et al. MARINE ECOLOGY PROGRESS SERIES
- Genomic DNA amplification by the multiple displacement amplification (MDA) method: Figure 1
- (2009) Roger S. Lasken BIOCHEMICAL SOCIETY TRANSACTIONS
- Bacterial diversity associated with the Brazilian endemic reef coralMussismilia braziliensis
- (2009) A.M.M. Reis et al. JOURNAL OF APPLIED MICROBIOLOGY
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- (2008) J. Yoon et al. INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY
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