标题
Emerging methods to study bacteriophage infection at the single-cell level
作者
关键词
-
出版物
Frontiers in Microbiology
Volume 5, Issue -, Pages -
出版商
Frontiers Media SA
发表日期
2014-12-23
DOI
10.3389/fmicb.2014.00724
参考文献
相关参考文献
注意:仅列出部分参考文献,下载原文获取全部文献信息。- Contrasting genomic patterns and infection strategies of two co-existingBacteroidetespodovirus genera
- (2014) Karin Holmfeldt et al. ENVIRONMENTAL MICROBIOLOGY
- Phage-bacteria network analysis and its implication for the understanding of coral disease
- (2014) Nitzan Soffer et al. ENVIRONMENTAL MICROBIOLOGY
- Classification and quantification of bacteriophage taxa in human gut metagenomes
- (2014) Alison S Waller et al. ISME Journal
- Low copy target detection by Droplet Digital PCR through application of a novel open access bioinformatic pipeline, ‘definetherain’
- (2014) Mathew Jones et al. JOURNAL OF VIROLOGICAL METHODS
- Improving the genetic representation of rare taxa within complex microbial communities using DNA normalization methods
- (2014) Dragana Gagic et al. Molecular Ecology Resources
- Viral tagging reveals discrete populations in Synechococcus viral genome sequence space
- (2014) Li Deng et al. NATURE
- The elemental composition of virus particles: implications for marine biogeochemical cycles
- (2014) Luis F. Jover et al. NATURE REVIEWS MICROBIOLOGY
- A theoretical analysis of how strain-specific viruses can control microbial species diversity
- (2014) T. F. Thingstad et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- Modeling ecological drivers in marine viral communities using comparative metagenomics and network analyses
- (2014) B. L. Hurwitz et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- Sulfur Oxidation Genes in Diverse Deep-Sea Viruses
- (2014) K. Anantharaman et al. SCIENCE
- First genome sequences of Achromobacter phages reveal new members of the N4 family
- (2014) Johannes Wittmann et al. Virology Journal
- The Characterization of RNA Viruses in Tropical Seawater Using Targeted PCR and Metagenomics
- (2014) A. I. Culley et al. mBio
- Single Cell Genomics: Advances and Future Perspectives
- (2014) Iain C. Macaulay et al. PLoS Genetics
- Ecology and evolution of viruses infecting uncultivated SUP05 bacteria as revealed by single-cell- and meta-genomics
- (2014) Simon Roux et al. eLife
- Single-cell and population level viral infection dynamics revealed by phageFISH, a method to visualize intracellular and free viruses
- (2013) Elke Allers et al. ENVIRONMENTAL MICROBIOLOGY
- Isolation and characterization of soilborne virulent bacteriophages infecting the pathogenRhodococcus equi
- (2013) S.P. Salifu et al. JOURNAL OF APPLIED MICROBIOLOGY
- Insights into the phylogeny and coding potential of microbial dark matter
- (2013) Christian Rinke et al. NATURE
- Abundant SAR11 viruses in the ocean
- (2013) Yanlin Zhao et al. NATURE
- Genome sequences of rare, uncultured bacteria obtained by differential coverage binning of multiple metagenomes
- (2013) Mads Albertsen et al. NATURE BIOTECHNOLOGY
- Metagenomic Analysis of Viral Communities in (Hado)Pelagic Sediments
- (2013) Mitsuhiro Yoshida et al. PLoS One
- The Pacific Ocean Virome (POV): A Marine Viral Metagenomic Dataset and Associated Protein Clusters for Quantitative Viral Ecology
- (2013) Bonnie L. Hurwitz et al. PLoS One
- Genome of a SAR116 bacteriophage shows the prevalence of this phage type in the oceans
- (2013) I. Kang et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- Gnotobiotic mouse model of phage-bacterial host dynamics in the human gut
- (2013) A. Reyes et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- Twelve previously unknown phage genera are ubiquitous in global oceans
- (2013) K. Holmfeldt et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- Contrasting Life Strategies of Viruses That Infect Photo- and Heterotrophic Bacteria, as Revealed by Viral Tagging
- (2013) L. Deng et al. mBio
- Coevolutionary diversification creates nested-modular structure in phage-bacteria interaction networks
- (2013) S. J. Beckett et al. Interface Focus
- Importance of prophages to evolution and virulence of bacterial pathogens
- (2013) Louis-Charles Fortier et al. Virulence
- Expanding the Marine Virosphere Using Metagenomics
- (2013) Carolina Megumi Mizuno et al. PLoS Genetics
- Metabolic reprogramming by viruses in the sunlit and dark ocean
- (2013) Bonnie L Hurwitz et al. GENOME BIOLOGY
- Virus-driven nitrogen cycling enhances phytoplankton growth
- (2012) EJ Shelford et al. AQUATIC MICROBIAL ECOLOGY
- Comparison of metagenomic samples using sequence signatures
- (2012) Bai Jiang et al. BMC GENOMICS
- Evaluation of methods to concentrate and purify ocean virus communities through comparative, replicated metagenomics
- (2012) Bonnie L. Hurwitz et al. ENVIRONMENTAL MICROBIOLOGY
- Towards quantitative metagenomics of wild viruses and other ultra-low concentration DNA samples: a rigorous assessment and optimization of the linker amplification method
- (2012) Melissa B. Duhaime et al. ENVIRONMENTAL MICROBIOLOGY
- Genomes of marine cyanopodoviruses reveal multiple origins of diversity
- (2012) S. J. Labrie et al. ENVIRONMENTAL MICROBIOLOGY
- CRISPR targeting reveals a reservoir of common phages associated with the human gut microbiome
- (2012) A. Stern et al. GENOME RESEARCH
- Orthologous Gene Clusters and Taxon Signature Genes for Viruses of Prokaryotes
- (2012) D. M. Kristensen et al. JOURNAL OF BACTERIOLOGY
- Digital PCR hits its stride
- (2012) Monya Baker NATURE METHODS
- Ultrabright photoactivatable fluorophores created by reductive caging
- (2012) Joshua C Vaughan et al. NATURE METHODS
- Genomic sequencing of uncultured microorganisms from single cells
- (2012) Roger S. Lasken NATURE REVIEWS MICROBIOLOGY
- Microbial ecology of expanding oxygen minimum zones
- (2012) Jody J. Wright et al. NATURE REVIEWS MICROBIOLOGY
- PhiSpy: a novel algorithm for finding prophages in bacterial genomes that combines similarity- and composition-based strategies
- (2012) Sajia Akhter et al. NUCLEIC ACIDS RESEARCH
- Assessing the Diversity and Specificity of Two Freshwater Viral Communities through Metagenomics
- (2012) Simon Roux et al. PLoS One
- Phage–bacteria infection networks
- (2012) Joshua S. Weitz et al. TRENDS IN MICROBIOLOGY
- Persisting Viral Sequences Shape Microbial CRISPR-based Immunity
- (2012) Ariel D. Weinberger et al. PLoS Computational Biology
- High-Throughput Droplet Digital PCR System for Absolute Quantitation of DNA Copy Number
- (2011) Benjamin J. Hindson et al. ANALYTICAL CHEMISTRY
- Characterization and genome sequencing of two Propionibacterium acnes phages displaying pseudolysogeny
- (2011) Rolf Lood et al. BMC GENOMICS
- Using CRISPRs as a metagenomic tool to identify microbial hosts of a diffuse flow hydrothermal vent viral assemblage
- (2011) Rika E. Anderson et al. FEMS MICROBIOLOGY ECOLOGY
- Detection of single-copy functional genes in prokaryotic cells by two-pass TSA-FISH with polynucleotide probes
- (2011) Shuji Kawakami et al. JOURNAL OF MICROBIOLOGICAL METHODS
- Detection and quantification of rare mutations with massively parallel sequencing
- (2011) I. Kinde et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- Phage auxiliary metabolic genes and the redirection of cyanobacterial host carbon metabolism
- (2011) L. R. Thompson et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- Single-Cell Genomics Reveals Organismal Interactions in Uncultivated Marine Protists
- (2011) H. S. Yoon et al. SCIENCE
- Probing Individual Environmental Bacteria for Viruses by Using Microfluidic Digital PCR
- (2011) A. D. Tadmor et al. SCIENCE
- Characterization of a newly discovered Mu-like bacteriophage, RcapMu, in Rhodobacter capsulatus strain SB1003
- (2011) Paul C.M. Fogg et al. VIROLOGY
- Is the Genetic Landscape of the Deep Subsurface Biosphere Affected by Viruses?
- (2011) Rika E. Anderson et al. Frontiers in Microbiology
- Microfluidic Platforms for Single-Cell Analysis
- (2010) Richard N. Zare et al. Annual Review of Biomedical Engineering
- Hydroxyapatite-Mediated Separation of Double-Stranded DNA, Single-Stranded DNA, and RNA Genomes from Natural Viral Assemblages
- (2010) C. Andrews-Pfannkoch et al. APPLIED AND ENVIRONMENTAL MICROBIOLOGY
- Breaking the Diffraction Barrier: Super-Resolution Imaging of Cells
- (2010) Bo Huang et al. CELL
- Detection of denitrification genes by in situ rolling circle amplification-fluorescence in situ hybridization to link metabolic potential with identity inside bacterial cells
- (2010) Tatsuhiko Hoshino et al. ENVIRONMENTAL MICROBIOLOGY
- GeneFISH - an in situ technique for linking gene presence and cell identity in environmental microorganisms
- (2010) Cristina Moraru et al. ENVIRONMENTAL MICROBIOLOGY
- Genomic analysis of oceanic cyanobacterial myoviruses compared with T4-like myoviruses from diverse hosts and environments
- (2010) Matthew B. Sullivan et al. ENVIRONMENTAL MICROBIOLOGY
- A guide to super-resolution fluorescence microscopy
- (2010) Lothar Schermelleh et al. JOURNAL OF CELL BIOLOGY
- Detection of Single Copy Genes by Two-Pass Tyramide Signal Amplification Fluorescence in situ Hybridization (Two-Pass TSA-FISH) with Single Oligonucleotide Probes
- (2010) Shuji Kawakami et al. MICROBES AND ENVIRONMENTS
- Molecular and physiological analysis of three Pseudomonas aeruginosa phages belonging to the “N4-like viruses”
- (2010) Pieter-Jan Ceyssens et al. VIROLOGY
- A simple and efficient method for concentration of ocean viruses by chemical flocculation
- (2010) Seth G. John et al. Environmental Microbiology Reports
- Cryptic prophages help bacteria cope with adverse environments
- (2010) Xiaoxue Wang et al. Nature Communications
- The bacteriophages in human- and animal body-associated microbial communities
- (2009) A. Letarov et al. JOURNAL OF APPLIED MICROBIOLOGY
- Photosystem I gene cassettes are present in marine virus genomes
- (2009) Itai Sharon et al. NATURE
- Metagenomic Analysis of Respiratory Tract DNA Viral Communities in Cystic Fibrosis and Non-Cystic Fibrosis Individuals
- (2009) Dana Willner et al. PLoS One
- Efficient Phage-Mediated Pigment Biosynthesis in Oceanic Cyanobacteria
- (2008) Thorben Dammeyer et al. CURRENT BIOLOGY
- Advantages and limitations of quantitative PCR (Q-PCR)-based approaches in microbial ecology
- (2008) Cindy J. Smith et al. FEMS MICROBIOLOGY ECOLOGY
- Corynebacterium diphtheriae: Genome diversity, population structure and genotyping perspectives
- (2008) I MOKROUSOV INFECTION GENETICS AND EVOLUTION
- Prophages in marine bacteria: dangerous molecular time bombs or the key to survival in the seas?
- (2008) John H Paul ISME Journal
- Virus Population Dynamics and Acquired Virus Resistance in Natural Microbial Communities
- (2008) A. F. Andersson et al. SCIENCE
Find Funding. Review Successful Grants.
Explore over 25,000 new funding opportunities and over 6,000,000 successful grants.
ExploreBecome a Peeref-certified reviewer
The Peeref Institute provides free reviewer training that teaches the core competencies of the academic peer review process.
Get Started