Transcriptional and epigenomic landscapes of CNS and non-CNS vascular endothelial cells
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Title
Transcriptional and epigenomic landscapes of CNS and non-CNS vascular endothelial cells
Authors
Keywords
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Journal
eLife
Volume 7, Issue -, Pages -
Publisher
eLife Sciences Publications, Ltd
Online
2018-09-06
DOI
10.7554/elife.36187
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Note: Only part of the references are listed.- A molecular atlas of cell types and zonation in the brain vasculature
- (2018) Michael Vanlandewijck et al. NATURE
- DACH1 stimulates shear stress-guided endothelial cell migration and coronary artery growth through the CXCL12–CXCR4 signaling axis
- (2017) Andrew H. Chang et al. GENES & DEVELOPMENT
- HOXA1 and TALE proteins display cross-regulatory interactions and form a combinatorial binding code on HOXA1 targets
- (2017) Bony De Kumar et al. GENOME RESEARCH
- GATA4-dependent organ-specific endothelial differentiation controls liver development and embryonic hematopoiesis
- (2017) Cyrill Géraud et al. JOURNAL OF CLINICAL INVESTIGATION
- Liver sinusoidal endothelial cells: Physiology and role in liver diseases
- (2017) Johanne Poisson et al. JOURNAL OF HEPATOLOGY
- Dynamics and Context-Dependent Roles of DNA Methylation
- (2017) Christina Ambrosi et al. JOURNAL OF MOLECULAR BIOLOGY
- Polycomb Repressive Complex 1 Generates Discrete Compacted Domains that Change during Differentiation
- (2017) Sharmistha Kundu et al. MOLECULAR CELL
- Intragenic DNA methylation prevents spurious transcription initiation
- (2017) Francesco Neri et al. NATURE
- Endothelial Notch signalling limits angiogenesis via control of artery formation
- (2017) Sana S. Hasan et al. NATURE CELL BIOLOGY
- Dll4 and Notch signalling couples sprouting angiogenesis and artery formation
- (2017) Mara E. Pitulescu et al. NATURE CELL BIOLOGY
- Vascular heterogeneity and specialization in development and disease
- (2017) Michael Potente et al. NATURE REVIEWS MOLECULAR CELL BIOLOGY
- Reck and Gpr124 Are Essential Receptor Cofactors for Wnt7a/Wnt7b-Specific Signaling in Mammalian CNS Angiogenesis and Blood-Brain Barrier Regulation
- (2017) Chris Cho et al. NEURON
- Mutation of a nucleosome compaction region disrupts Polycomb-mediated axial patterning
- (2017) Mei Sheng Lau et al. SCIENCE
- Single-cell methylomes identify neuronal subtypes and regulatory elements in mammalian cortex
- (2017) Chongyuan Luo et al. SCIENCE
- Impact of cytosine methylation on DNA binding specificities of human transcription factors
- (2017) Yimeng Yin et al. SCIENCE
- Robust Identification of Developmentally Active Endothelial Enhancers in Zebrafish Using FANS-Assisted ATAC-Seq
- (2017) Aurelie Quillien et al. Cell Reports
- Quantitative Analysis of the DNA Methylation Sensitivity of Transcription Factor Complexes
- (2017) Judith F. Kribelbauer et al. Cell Reports
- Mapping cell type-specific transcriptional enhancers using high affinity, lineage-specific Ep300 bioChIP-seq
- (2017) Pingzhu Zhou et al. eLife
- Transcriptional networks specifying homeostatic and inflammatory programs of gene expression in human aortic endothelial cells
- (2017) Nicholas T Hogan et al. eLife
- Adult Mouse Liver Contains Two Distinct Populations of Cholangiocytes
- (2017) Bin Li et al. Stem Cell Reports
- Inheritable Silencing of Endogenous Genes by Hit-and-Run Targeted Epigenetic Editing
- (2016) Angelo Amabile et al. CELL
- Editing DNA Methylation in the Mammalian Genome
- (2016) X. Shawn Liu et al. CELL
- Immunological functions of liver sinusoidal endothelial cells
- (2016) Percy A Knolle et al. Cellular & Molecular Immunology
- The endothelial E3 ligase HECW2 promotes endothelial cell junctions by increasing AMOTL1 protein stability via K63-linked ubiquitination
- (2016) Kyu-Sung Choi et al. CELLULAR SIGNALLING
- In vitro models of the blood–brain barrier: An overview of commonly used brain endothelial cell culture models and guidelines for their use
- (2016) Hans C Helms et al. JOURNAL OF CEREBRAL BLOOD FLOW AND METABOLISM
- Long Terminal Repeats: From Parasitic Elements to Building Blocks of the Transcriptional Regulatory Repertoire
- (2016) Peter J. Thompson et al. MOLECULAR CELL
- deepTools2: a next generation web server for deep-sequencing data analysis
- (2016) Fidel Ramírez et al. NUCLEIC ACIDS RESEARCH
- Expansion of the Gene Ontology knowledgebase and resources
- (2016) NUCLEIC ACIDS RESEARCH
- PANTHER version 11: expanded annotation data from Gene Ontology and Reactome pathways, and data analysis tool enhancements
- (2016) Huaiyu Mi et al. NUCLEIC ACIDS RESEARCH
- Syntax compensates for poor binding sites to encode tissue specificity of developmental enhancers
- (2016) Emma K. Farley et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- Regulatory evolution of innate immunity through co-option of endogenous retroviruses
- (2016) E. B. Chuong et al. SCIENCE
- FOXF1 maintains endothelial barrier function and prevents edema after lung injury
- (2016) Yuqi Cai et al. Science Signaling
- Epigenomic landscapes of retinal rods and cones
- (2016) Alisa Mo et al. eLife
- FOXF1 maintains endothelial barrier function and prevents edema after lung injury
- (2016) Yuqi Cai et al. Science Signaling
- Lethal lung hypoplasia and vascular defects in mice with conditionalFoxf1overexpression
- (2016) Avinash V. Dharmadhikari et al. Biology Open
- Establishment and Dysfunction of the Blood-Brain Barrier
- (2015) Zhen Zhao et al. CELL
- Highly Parallel Genome-wide Expression Profiling of Individual Cells Using Nanoliter Droplets
- (2015) Evan Z. Macosko et al. CELL
- Pbx1-dependent control of VMC differentiation kinetics underlies gross renal vascular patterning
- (2015) Romulo Hurtado et al. DEVELOPMENT
- Sox7 controls arterial specification in conjunction with hey2 and efnb2 function
- (2015) D. M. A. Hermkens et al. DEVELOPMENT
- The ETS Factor, ETV2: a Master Regulator for Vascular Endothelial Cell Development
- (2015) MOLECULES AND CELLS
- Human body epigenome maps reveal noncanonical DNA methylation variation
- (2015) Matthew D. Schultz et al. NATURE
- The selection and function of cell type-specific enhancers
- (2015) Sven Heinz et al. NATURE REVIEWS MOLECULAR CELL BIOLOGY
- Epigenomic Signatures of Neuronal Diversity in the Mammalian Brain
- (2015) Alisa Mo et al. NEURON
- Data quality aware analysis of differential expression in RNA-seq with NOISeq R/Bioc package
- (2015) Sonia Tarazona et al. NUCLEIC ACIDS RESEARCH
- Sodium channel Na x is a regulator in epithelial sodium homeostasis
- (2015) Wei Xu et al. Science Translational Medicine
- GPR124 Functions as a WNT7-Specific Coactivator of Canonical β-Catenin Signaling
- (2015) Ekaterina Posokhova et al. Cell Reports
- An arterial-specific enhancer of the human endothelin converting enzyme 1 (ECE1) gene is synergistically activated by Sox17, FoxC2, and Etv2
- (2014) Ashley S. Robinson et al. DEVELOPMENTAL BIOLOGY
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- (2014) Mark Toshner et al. PLoS One
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- (2013) M. Ehling et al. DEVELOPMENT
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- (2013) Daniel J. Nolan et al. DEVELOPMENTAL CELL
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- (2013) E. Longobardi et al. DEVELOPMENTAL DYNAMICS
- Charting a dynamic DNA methylation landscape of the human genome
- (2013) Michael J. Ziller et al. NATURE
- Large conserved domains of low DNA methylation maintained by Dnmt3a
- (2013) Mira Jeong et al. NATURE GENETICS
- Epigenetic memory at embryonic enhancers identified in DNA methylation maps from adult mouse tissues
- (2013) Gary C Hon et al. NATURE GENETICS
- Endogenous retroviruses function as species-specific enhancer elements in the placenta
- (2013) Edward B Chuong et al. NATURE GENETICS
- Transposition of native chromatin for fast and sensitive epigenomic profiling of open chromatin, DNA-binding proteins and nucleosome position
- (2013) Jason D Buenrostro et al. NATURE METHODS
- Identification of active regulatory regions from DNA methylation data
- (2013) Lukas Burger et al. NUCLEIC ACIDS RESEARCH
- Endothelin-2 signaling in the neural retina promotes the endothelial tip cell state and inhibits angiogenesis
- (2013) A. Rattner et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- Global Epigenomic Reconfiguration During Mammalian Brain Development
- (2013) R. Lister et al. SCIENCE
- Sox17 is indispensable for acquisition and maintenance of arterial identity
- (2013) Monica Corada et al. Nature Communications
- DNA methylation presents distinct binding sites for human transcription factors
- (2013) Shaohui Hu et al. eLife
- Integrative Genomics Viewer (IGV): high-performance genomics data visualization and exploration
- (2012) H. Thorvaldsdottir et al. BRIEFINGS IN BIOINFORMATICS
- Norrin/Frizzled4 Signaling in Retinal Vascular Development and Blood Brain Barrier Plasticity
- (2012) Yanshu Wang et al. CELL
- Comparison of Models for the Collinearity of Hox Genes in the Developmental Axes of Vertebrates
- (2012) Spyros Papageorgiou CURRENT GENOMICS
- Endothelial Cells Are Able to Synthesize and Release Catecholamines Both In Vitro and In Vivo
- (2012) Daniela Sorriento et al. HYPERTENSION
- DNA Methylation Dynamics during In Vivo Differentiation of Blood and Skin Stem Cells
- (2012) Christoph Bock et al. MOLECULAR CELL
- Differential oestrogen receptor binding is associated with clinical outcome in breast cancer
- (2012) Caryn S. Ross-Innes et al. NATURE
- The accessible chromatin landscape of the human genome
- (2012) Robert E. Thurman et al. NATURE
- Fiji: an open-source platform for biological-image analysis
- (2012) Johannes Schindelin et al. NATURE METHODS
- Fast gapped-read alignment with Bowtie 2
- (2012) Ben Langmead et al. NATURE METHODS
- Differential expression analysis of multifactor RNA-Seq experiments with respect to biological variation
- (2012) Davis J. McCarthy et al. NUCLEIC ACIDS RESEARCH
- Transformation of a transposon into a derived prolactin promoter with function during human pregnancy
- (2012) D. Emera et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- TCF/LEFs and Wnt Signaling in the Nucleus
- (2012) K. M. Cadigan et al. Cold Spring Harbor Perspectives in Biology
- Spatial coordination between cell and nuclear shape within micropatterned endothelial cells
- (2012) Marie Versaevel et al. Nature Communications
- Genomic and Biochemical Insights into the Specificity of ETS Transcription Factors
- (2011) Peter C. Hollenhorst et al. Annual Review of Biochemistry
- c-Maf plays a crucial role for the definitive erythropoiesis that accompanies erythroblastic island formation in the fetal liver
- (2011) M. Kusakabe et al. BLOOD
- RSEM: accurate transcript quantification from RNA-Seq data with or without a reference genome
- (2011) Bo Li et al. BMC BIOINFORMATICS
- Arterial-venous network formation during brain vascularization involves hemodynamic regulation of chemokine signaling
- (2011) J. Bussmann et al. DEVELOPMENT
- Differential expression in RNA-seq: A matter of depth
- (2011) S. Tarazona et al. GENOME RESEARCH
- DNA-binding factors shape the mouse methylome at distal regulatory regions
- (2011) Michael B. Stadler et al. NATURE
- Mapping and analysis of chromatin state dynamics in nine human cell types
- (2011) Jason Ernst et al. NATURE
- Integrative genomics viewer
- (2011) James T Robinson et al. NATURE BIOTECHNOLOGY
- Uncovering the behaviors of individual cells within a multicellular microvascular community
- (2011) H. Parsa et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- Angiogenic sprouting into neural tissue requires Gpr124, an orphan G protein-coupled receptor
- (2011) K. D. Anderson et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- GPR124, an orphan G protein-coupled receptor, is required for CNS-specific vascularization and establishment of the blood-brain barrier
- (2011) M. Cullen et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- The Dynamic Architecture of Hox Gene Clusters
- (2011) D. Noordermeer et al. SCIENCE
- Regulation of endothelial cell development by ETS transcription factors
- (2011) Stryder M. Meadows et al. SEMINARS IN CELL & DEVELOPMENTAL BIOLOGY
- BEDTools: a flexible suite of utilities for comparing genomic features
- (2010) Aaron R. Quinlan et al. BIOINFORMATICS
- Microarray analysis of retinal endothelial tip cells identifies CXCR4 as a mediator of tip cell morphology and branching
- (2010) G. A. Strasser et al. BLOOD
- Identification and functional analysis of endothelial tip cell-enriched genes
- (2010) R. del Toro et al. BLOOD
- Genome-wide analysis of ETS-family DNA-binding in vitro and in vivo
- (2010) Gong-Hong Wei et al. EMBO JOURNAL
- Dynamic changes in the human methylome during differentiation
- (2010) L. Laurent et al. GENOME RESEARCH
- The Sodium Channel β3-Subunit Induces Multiphasic Gating in NaV1.3 and Affects Fast Inactivation via Distinct Intracellular Regions
- (2010) Fiona S. Cusdin et al. JOURNAL OF BIOLOGICAL CHEMISTRY
- Ring1B Compacts Chromatin Structure and Represses Gene Expression Independent of Histone Ubiquitination
- (2010) Ragnhild Eskeland et al. MOLECULAR CELL
- Simple Combinations of Lineage-Determining Transcription Factors Prime cis-Regulatory Elements Required for Macrophage and B Cell Identities
- (2010) Sven Heinz et al. MOLECULAR CELL
- GREAT improves functional interpretation of cis-regulatory regions
- (2010) Cory Y McLean et al. NATURE BIOTECHNOLOGY
- The three-dimensional architecture of Hox cluster silencing
- (2010) Maria A. Ferraiuolo et al. NUCLEIC ACIDS RESEARCH
- The Mouse Blood-Brain Barrier Transcriptome: A New Resource for Understanding the Development and Function of Brain Endothelial Cells
- (2010) Richard Daneman et al. PLoS One
- Essential Regulation of CNS Angiogenesis by the Orphan G Protein-Coupled Receptor GPR124
- (2010) F. Kuhnert et al. SCIENCE
- edgeR: a Bioconductor package for differential expression analysis of digital gene expression data
- (2009) M. D. Robinson et al. BIOINFORMATICS
- TSPAN12 Regulates Retinal Vascular Development by Promoting Norrin- but Not Wnt-Induced FZD4/β-Catenin Signaling
- (2009) Harald J. Junge et al. CELL
- Norrin, Frizzled-4, and Lrp5 Signaling in Endothelial Cells Controls a Genetic Program for Retinal Vascularization
- (2009) Xin Ye et al. CELL
- Wnt/ -catenin signaling is required for CNS, but not non-CNS, angiogenesis
- (2009) R. Daneman et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- Chromatin conformation signatures of cellular differentiation
- (2009) James Fraser et al. GENOME BIOLOGY
- Interplay among Etsrp/ER71, Scl, and Alk8 signaling controls endothelial and myeloid cell formation
- (2008) S. Sumanas et al. BLOOD
- Evidence for Hox-specified positional identities in adult vasculature
- (2008) Nathanael D Pruett et al. BMC DEVELOPMENTAL BIOLOGY
- Combinatorial Regulation of Endothelial Gene Expression by Ets and Forkhead Transcription Factors
- (2008) Sarah De Val et al. CELL
- Highly Integrated Single-Base Resolution Maps of the Epigenome in Arabidopsis
- (2008) Ryan Lister et al. CELL
- Genome-Wide Analysis of the Zebrafish ETS Family Identifies Three Genes Required for Hemangioblast Differentiation or Angiogenesis
- (2008) Feng Liu et al. CIRCULATION RESEARCH
- Wnt/β-catenin signaling controls development of the blood–brain barrier
- (2008) Stefan Liebner et al. JOURNAL OF CELL BIOLOGY
- Canonical Wnt Signaling Regulates Organ-Specific Assembly and Differentiation of CNS Vasculature
- (2008) J. M. Stenman et al. SCIENCE
- Model-based Analysis of ChIP-Seq (MACS)
- (2008) Yong Zhang et al. GENOME BIOLOGY
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