Loci and natural alleles underlying robust roots and adaptive domestication of upland ecotype rice in aerobic conditions

Genomic variation in 3,010 diverse accessions of Asian cultivated rice

(2018) Wensheng Wang et al.   NATURE

Genetic control of the root system in rice under normal and drought stress conditions by genome-wide association study

(2017) Xiaokai Li et al.   PLoS Genetics

OsSPL13 controls grain size in cultivated rice

(2016) Lizhen Si et al.   NATURE GENETICS

Genome-wide association study using whole-genome sequencing rapidly identifies new genes influencing agronomic traits in rice

(2016) Kenji Yano et al.   NATURE GENETICS

Distinguishing upland and lowland rice ecotypes by selective SSRs and their applications in molecular-assisted selection of rice drought resistance

(2015) Hui Xia et al.   EUPHYTICA

qRT9, a quantitative trait locus controlling root thickness and root length in upland rice

(2015) Junzhou Li et al.   JOURNAL OF EXPERIMENTAL BOTANY

MutMap accelerates breeding of a salt-tolerant rice cultivar

(2015) Hiroki Takagi et al.   NATURE BIOTECHNOLOGY

The Interaction between Rice ERF3 and WOX11 Promotes Crown Root Development by Regulating Gene Expression Involved in Cytokinin Signaling

(2015) Yu Zhao et al.   PLANT CELL

Comparative transcriptome sequencing of tolerant rice introgression line and its parents in response to drought stress

(2014) Liyu Huang et al.   BMC GENOMICS

A genomic perspective on the important genetic mechanisms of upland adaptation of rice

(2014) Jun Lyu et al.   BMC PLANT BIOLOGY

Over-expression of OsPTR6 in rice increased plant growth at different nitrogen supplies but decreased nitrogen use efficiency at high ammonium supply

(2014) Xiaorong Fan et al.   PLANT SCIENCE

Genetic Differentiation Revealed by Selective Loci of Drought-Responding EST-SSRs between Upland and Lowland Rice in China

(2014) Hui Xia et al.   PLoS One

Coordinated regulation of photosynthesis in rice increases yield and tolerance to environmental stress

(2014) Madana M. R. Ambavaram et al.   Nature Communications

The 3,000 rice genomes project: new opportunities and challenges for future rice research

(2014) Jia-Yang Li et al.   GigaScience

The 3,000 rice genomes project

(2014)   GigaScience

Genetic Engineering and Breeding of Drought-Resistant Crops

(2013) Honghong Hu et al.   Annual Review of Plant Biology

Identification of qRL7, a major quantitative trait locus associated with rice root length in hydroponic conditions

(2013) Huimin Wang et al.   BREEDING SCIENCE

Temporal changes in climatic variables and their impact on crop yields in southwestern China

(2013) Hong-Bin Liu et al.   INTERNATIONAL JOURNAL OF BIOMETEOROLOGY

Control of root system architecture by DEEPER ROOTING 1 increases rice yield under drought conditions

(2013) Yusaku Uga et al.   NATURE GENETICS

RICE SALT SENSITIVE3 Forms a Ternary Complex with JAZ and Class-C bHLH Factors and Regulates Jasmonate-Induced Gene Expression and Root Cell Elongation

(2013) Yosuke Toda et al.   PLANT CELL

Genome-Wide Association Mapping of Root Traits in a Japonica Rice Panel

(2013) Brigitte Courtois et al.   PLoS One

Analysis of elite variety tag SNPs reveals an important allele in upland rice

(2013) Jun Lyu et al.   Nature Communications

A major QTL controlling deep rooting on rice chromosome 4

(2013) Yusaku Uga et al.   Scientific Reports

Root traits contributing to plant productivity under drought

(2013) Louise H. Comas et al.   Frontiers in Plant Science

Studies on the Rice LEAF INCLINATION1 (LC1), an IAA–amido Synthetase, Reveal the Effects of Auxin in Leaf Inclination Control

(2012) Shu-Qing Zhao et al.   Molecular Plant

A map of rice genome variation reveals the origin of cultivated rice

(2012) Xuehui Huang et al.   NATURE

Genetic Structure and Eco-Geographical Differentiation of Cultivated Keng Rice (Oryza sativa L. subsp. japonica) in China Revealed by Microsatellites

(2012) Dong-ling ZHANG et al.   Journal of Integrative Agriculture

Estimation of Southeast Asian rice paddy areas with different ecosystems from moderate-resolution satellite imagery

(2011) Arika Bridhikitti et al.   AGRICULTURE ECOSYSTEMS & ENVIRONMENT

Comparative analysis of root transcriptome profiles of two pairs of drought-tolerant and susceptible rice near-isogenic lines under different drought stress

(2011) Ali Moumeni et al.   BMC PLANT BIOLOGY

Root biology and genetic improvement for drought avoidance in rice

(2011) Veeresh R.P. Gowda et al.   FIELD CROPS RESEARCH

Dro1, a major QTL involved in deep rooting of rice under upland field conditions

(2011) Yusaku Uga et al.   JOURNAL OF EXPERIMENTAL BOTANY

Development of upland rice introgression lines and identification of QTLs for basal root thickness under different water regimes

(2011) Junzhou Li et al.   Journal of Genetics and Genomics

Genome-wide association study of flowering time and grain yield traits in a worldwide collection of rice germplasm

(2011) Xuehui Huang et al.   NATURE GENETICS

Identification of qSOR1, a major rice QTL involved in soil-surface rooting in paddy fields

(2011) Yusaku Uga et al.   THEORETICAL AND APPLIED GENETICS

Genome-wide association studies of 14 agronomic traits in rice landraces

(2010) Xuehui Huang et al.   NATURE GENETICS

Functional characterization of the SIZ/PIAS-type SUMO E3 ligases, OsSIZ1 and OsSIZ2 in rice

(2010) HYEONG CHEOL PARK et al.   PLANT CELL AND ENVIRONMENT

OsSIZ1 Regulates the Vegetative Growth and Reproductive Development in Rice

(2010) Huadun Wang et al.   PLANT MOLECULAR BIOLOGY REPORTER

SIZ1 Regulation of Phosphate Starvation-Induced Root Architecture Remodeling Involves the Control of Auxin Accumulation

(2010) K. Miura et al.   PLANT PHYSIOLOGY

Fine-mapping of qRL6.1, a major QTL for root length of rice seedlings grown under a wide range of NH4 + concentrations in hydroponic conditions

(2010) Mitsuhiro Obara et al.   THEORETICAL AND APPLIED GENETICS

A core collection and mini core collection of Oryza sativa L. in China

(2010) Hongliang Zhang et al.   THEORETICAL AND APPLIED GENETICS

Genetic control of root development in rice, the model cereal

(2010) Yoan Coudert et al.   TRENDS IN PLANT SCIENCE

Fast model-based estimation of ancestry in unrelated individuals

(2009) D. H. Alexander et al.   GENOME RESEARCH

Constitutive Expression ofOsGH3.1Reduces Auxin Content and Enhances Defense Response and Resistance to a Fungal Pathogen in Rice

(2009) Concha Domingo et al.   MOLECULAR PLANT-MICROBE INTERACTIONS

The WUSCHEL-Related Homeobox Gene WOX11 Is Required to Activate Shoot-Borne Crown Root Development in Rice

(2009) Y. Zhao et al.   PLANT CELL

Altered Architecture and Enhanced Drought Tolerance in Rice via the Down-Regulation of Indole-3-Acetic Acid by TLD1/OsGH3.13 Activation

(2009) S.-W. Zhang et al.   PLANT PHYSIOLOGY

Systematic identification and expression analysis of BREVIS RADIX-like homologous genes in rice

(2009) Jia Liu et al.   PLANT SCIENCE

Localization of QTL for basal root thickness in japonica rice and effect of marker-assisted selection for a major QTL

(2008) Lifeng Liu et al.   EUPHYTICA

Rice 2020: A Call For An International Coordinated Effort In Rice Functional Genomics

(2008) Qifa Zhang et al.   Molecular Plant

Genetic Opportunities to Improve Cereal Root Systems for Dryland Agriculture

(2008) Richard A. Richards   PLANT PRODUCTION SCIENCE