Phylodynamic Inference for Structured Epidemiological Models

Relating Phylogenetic Trees to Transmission Trees of Infectious Disease Outbreaks

(2013) Rolf J. F. Ypma et al.   GENETICS

Reconciling Phylodynamics with Epidemiology: The Case of Dengue Virus in Southern Vietnam

(2013) David A. Rasmussen et al.   MOLECULAR BIOLOGY AND EVOLUTION

Coalescent inference for infectious disease: meta-analysis of hepatitis C

(2013) B. Dearlove et al.   PHILOSOPHICAL TRANSACTIONS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES

Prospects of elimination of HIV with test-and-treat strategy

(2013) M. E. Kretzschmar et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

HIV-1 Transmission during Early Infection in Men Who Have Sex with Men: A Phylodynamic Analysis

(2013) Erik M. Volz et al.   PLOS MEDICINE

Unifying the spatial epidemiology and molecular evolution of emerging epidemics

(2012) O. G. Pybus et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Simple Epidemiological Dynamics Explain Phylogenetic Clustering of HIV from Patients with Recent Infection

(2012) Erik M. Volz et al.   PLoS Computational Biology

HIV Treatment as Prevention: Debate and Commentary—Will Early Infection Compromise Treatment-as-Prevention Strategies?

(2012) Myron S. Cohen et al.   PLOS MEDICINE

Complex Population Dynamics and the Coalescent Under Neutrality

(2011) Erik M. Volz   GENETICS

Transmission Network Parameters Estimated From HIV Sequences for a Nationwide Epidemic

(2011) Andrew J. Leigh Brown et al.   JOURNAL OF INFECTIOUS DISEASES

Rates of coalescence for common epidemiological models at equilibrium

(2011) K. Koelle et al.   Journal of the Royal Society Interface

The role of acute and early HIV infection in the spread of HIV and implications for transmission prevention strategies in Lilongwe, Malawi: a modelling study

(2011) Kimberly A Powers et al.   LANCET

Estimating the Basic Reproductive Number from Viral Sequence Data

(2011) Tanja Stadler et al.   MOLECULAR BIOLOGY AND EVOLUTION

Inference for Nonlinear Epidemiological Models Using Genealogies and Time Series

(2011) David A. Rasmussen et al.   PLoS Computational Biology

Particle Markov chain Monte Carlo methods

(2010) Christophe Andrieu et al.   JOURNAL OF THE ROYAL STATISTICAL SOCIETY SERIES B-STATISTICAL METHODOLOGY

Viral phylodynamics and the search for an 'effective number of infections'

(2010) S. D. W. Frost et al.   PHILOSOPHICAL TRANSACTIONS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES

The pseudo-marginal approach for efficient Monte Carlo computations

(2009) Christophe Andrieu et al.   ANNALS OF STATISTICS

Phylodynamics of Infectious Disease Epidemics

(2009) Erik M. Volz et al.   GENETICS

Bayesian Phylogeography Finds Its Roots

(2009) Philippe Lemey et al.   PLoS Computational Biology

HIV-1 Transmission, by Stage of Infection

(2008) T. Déirdre Hollingsworth et al.   JOURNAL OF INFECTIOUS DISEASES

Universal voluntary HIV testing with immediate antiretroviral therapy as a strategy for elimination of HIV transmission: a mathematical model

(2008) Reuben M Granich et al.   LANCET

Episodic Sexual Transmission of HIV Revealed by Molecular Phylodynamics

(2008) Fraser Lewis et al.   PLOS MEDICINE