Simple Epidemiological Dynamics Explain Phylogenetic Clustering of HIV from Patients with Recent Infection

Ambiguous Nucleotide Calls From Population-based Sequencing of HIV-1 are a Marker for Viral Diversity and the Age of Infection

(2011) Roger D. Kouyos et al.   CLINICAL INFECTIOUS DISEASES

Complex Population Dynamics and the Coalescent Under Neutrality

(2011) Erik M. Volz   GENETICS

Transmission Network Parameters Estimated From HIV Sequences for a Nationwide Epidemic

(2011) Andrew J. Leigh Brown et al.   JOURNAL OF INFECTIOUS DISEASES

Estimated HIV Incidence in the United States, 2006–2009

(2011) Joseph Prejean et al.   PLoS One

Antiretroviral Agents Used by HIV‐Uninfected Persons for Prevention: Pre‐ and Postexposure Prophylaxis

(2010) Robert M. Grant   CLINICAL INFECTIOUS DISEASES

HIV Transmission by Stage of Infection and Pattern of Sexual Partnerships

(2010) Jong-Hoon Kim et al.   EPIDEMIOLOGY

Recovering Population Parameters from a Single Gene Genealogy: An Unbiased Estimator of the Growth Rate

(2010) Yosef E. Maruvka et al.   MOLECULAR BIOLOGY AND EVOLUTION

Viral phylodynamics and the search for an 'effective number of infections'

(2010) S. D. W. Frost et al.   PHILOSOPHICAL TRANSACTIONS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES

High Multiplicity Infection by HIV-1 in Men Who Have Sex with Men

(2010) Hui Li et al.   PLoS Pathogens

The impact of transmission clusters on primary drug resistance in newly diagnosed HIV-1 infection

(2009) Sabine Yerly et al.   AIDS

Transmission networks of HIV-1 among men having sex with men in the Netherlands

(2009) Daniela Bezemer et al.   AIDS

Phylodynamics of Infectious Disease Epidemics

(2009) Erik M. Volz et al.   GENETICS

Efficient Approximate Bayesian Computation Coupled With Markov Chain Monte Carlo Without Likelihood

(2009) Daniel Wegmann et al.   GENETICS

HIV-1 Transmission Cluster With T215D Revertant Mutation Among Newly Diagnosed Patients From the Basque Country, Spain

(2009) Maria Teresa Cuevas et al.   JAIDS-JOURNAL OF ACQUIRED IMMUNE DEFICIENCY SYNDROMES

Evolutionary analysis of the dynamics of viral infectious disease

(2009) Oliver G. Pybus et al.   NATURE REVIEWS GENETICS

Drug Resistance Mutations for Surveillance of Transmitted HIV-1 Drug-Resistance: 2009 Update

(2009) Diane E. Bennett et al.   PLoS One

Bayesian Phylogeography Finds Its Roots

(2009) Philippe Lemey et al.   PLoS Computational Biology

Molecular Phylodynamics of the Heterosexual HIV Epidemic in the United Kingdom

(2009) Gareth J. Hughes et al.   PLoS Pathogens

Transmission networks of drug resistance acquired in primary/early stage HIV infection

(2008) Bluma G Brenner et al.   AIDS

Approximate Bayesian computation scheme for parameter inference and model selection in dynamical systems

(2008) T. Toni et al.   Journal of the Royal Society Interface

Universal voluntary HIV testing with immediate antiretroviral therapy as a strategy for elimination of HIV transmission: a mathematical model

(2008) Reuben M Granich et al.   LANCET

A joint back calculation model for the imputation of the date of HIV infection in a prevalent cohort

(2008) Patrick Taffé et al.   STATISTICS IN MEDICINE

Episodic Sexual Transmission of HIV Revealed by Molecular Phylodynamics

(2008) Fraser Lewis et al.   PLOS MEDICINE