Coalescent inference for infectious disease: meta-analysis of hepatitis C

Bayesian Phylogenetics with BEAUti and the BEAST 1.7

(2012) Alexei J. Drummond et al.   MOLECULAR BIOLOGY AND EVOLUTION

Inferring Epidemic Contact Structure from Phylogenetic Trees

(2012) Gabriel E. Leventhal et al.   PLoS Computational Biology

The mode and tempo of hepatitis C virus evolution within and among hosts

(2011) Rebecca R Gray et al.   BMC EVOLUTIONARY BIOLOGY

Evolutionary history of hepatitis C virus genotype 5a in France, a multicenter ANRS study

(2011) Cécile Henquell et al.   INFECTION GENETICS AND EVOLUTION

Rates of coalescence for common epidemiological models at equilibrium

(2011) K. Koelle et al.   Journal of the Royal Society Interface

Estimating the Basic Reproductive Number from Viral Sequence Data

(2011) Tanja Stadler et al.   MOLECULAR BIOLOGY AND EVOLUTION

Parallel bacterial evolution within multiple patients identifies candidate pathogenicity genes

(2011) Tami D Lieberman et al.   NATURE GENETICS

Phylodynamics of Hepatitis C Virus Subtype 2c in the Province of Córdoba, Argentina

(2011) Viviana E. Ré et al.   PLoS One

A Possible Geographic Origin of Endemic Hepatitis C Virus 6a in Hong Kong: Evidences for the Association with Vietnamese Immigration

(2011) Xiaoming Zhou et al.   PLoS One

Temporally structured metapopulation dynamics and persistence of influenza A H3N2 virus in humans

(2011) J. Bahl et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Inference for Nonlinear Epidemiological Models Using Genealogies and Time Series

(2011) David A. Rasmussen et al.   PLoS Computational Biology

Evolving epidemiology of hepatitis C virus

(2010) D. Lavanchy   CLINICAL MICROBIOLOGY AND INFECTION

New trends of HCV infection in China revealed by genetic analysis of viral sequences determined from first-time volunteer blood donors

(2010) Y. Fu et al.   JOURNAL OF VIRAL HEPATITIS

The Origin of the Haitian Cholera Outbreak Strain

(2010) Chen-Shan Chin et al.   NEW ENGLAND JOURNAL OF MEDICINE

Viral phylodynamics and the search for an 'effective number of infections'

(2010) S. D. W. Frost et al.   PHILOSOPHICAL TRANSACTIONS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES

Phylodynamics of Infectious Disease Epidemics

(2009) Erik M. Volz et al.   GENETICS

Geographic distribution of hepatitis C virus genotype 6 subtypes in Thailand

(2009) Srunthron Akkarathamrongsin et al.   JOURNAL OF MEDICAL VIROLOGY

Origins and evolutionary genomics of the 2009 swine-origin H1N1 influenza A epidemic

(2009) Gavin J. D. Smith et al.   NATURE

Evolutionary analysis of the dynamics of viral infectious disease

(2009) Oliver G. Pybus et al.   NATURE REVIEWS GENETICS

Genetic Diversity in the SIR Model of Pathogen Evolution

(2009) Isabel Gordo et al.   PLoS One

Pandemic Potential of a Strain of Influenza A (H1N1): Early Findings

(2009) C. Fraser et al.   SCIENCE

Unifying Vertical and Nonvertical Evolution: A Stochastic ARG-based Framework

(2009) Erik W. Bloomquist et al.   SYSTEMATIC BIOLOGY

The Global Spread of Hepatitis C Virus 1a and 1b: A Phylodynamic and Phylogeographic Analysis

(2009) Gkikas Magiorkinis et al.   PLOS MEDICINE

The epidemic history of hepatitis C among injecting drug users in Flanders, Belgium

(2008) C. Matheï et al.   JOURNAL OF VIRAL HEPATITIS

Genetic History of Hepatitis C Virus in East Asia

(2008) O. G. Pybus et al.   JOURNAL OF VIROLOGY

Transmission Pathways of Foot-and-Mouth Disease Virus in the United Kingdom in 2007

(2008) Eleanor M. Cottam et al.   PLoS Pathogens

The changing epidemiology of hepatitis C virus infection in Europe

(2007) Juan I. Esteban et al.   JOURNAL OF HEPATOLOGY