Inference for Nonlinear Epidemiological Models Using Genealogies and Time Series

Approximate Bayesian Computation in Evolution and Ecology

(2010) Mark A. Beaumont   Annual Review of Ecology Evolution and Systematics

Protocols for sampling viral sequences to study epidemic dynamics

(2010) J. C. Stack et al.   Journal of the Royal Society Interface

Particle Markov chain Monte Carlo methods

(2010) Christophe Andrieu et al.   JOURNAL OF THE ROYAL STATISTICAL SOCIETY SERIES B-STATISTICAL METHODOLOGY

Introduction and snapshot review: Relating infectious disease transmission models to data

(2010) Philip D. O'Neill   STATISTICS IN MEDICINE

Phylodynamic Reconstruction Reveals Norovirus GII.4 Epidemic Expansions and their Molecular Determinants

(2010) J. Joukje Siebenga et al.   PLoS Pathogens

Time series analysis via mechanistic models

(2009) Carles Bretó et al.   Annals of Applied Statistics

Phylodynamics of Infectious Disease Epidemics

(2009) Erik M. Volz et al.   GENETICS

Plug-and-play inference for disease dynamics: measles in large and small populations as a case study

(2009) D. He et al.   Journal of the Royal Society Interface

Epidemic Dynamics Revealed in Dengue Evolution

(2009) S.N. Bennett et al.   MOLECULAR BIOLOGY AND EVOLUTION

Pandemic Potential of a Strain of Influenza A (H1N1): Early Findings

(2009) C. Fraser et al.   SCIENCE

Discovering the Phylodynamics of RNA Viruses

(2009) Edward C. Holmes et al.   PLoS Computational Biology

Likelihood-based estimation of continuous-time epidemic models from time-series data: application to measles transmission in London

(2008) S. Cauchemez et al.   Journal of the Royal Society Interface

Smooth Skyride through a Rough Skyline: Bayesian Coalescent-Based Inference of Population Dynamics

(2008) V. N. Minin et al.   MOLECULAR BIOLOGY AND EVOLUTION

The genomic and epidemiological dynamics of human influenza A virus

(2008) Andrew Rambaut et al.   NATURE