Artificial cell-cell communication as an emerging tool in synthetic biology applications

Riboswitch engineering — making the all-important second and third steps

(2015) Christian Berens et al.   CURRENT OPINION IN BIOTECHNOLOGY

New Biofuel Alternatives: Integrating Waste Management and Single Cell Oil Production

(2015) Elia Martínez et al.   INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES

A yeast pheromone-based inter-species communication system

(2014) Stefan Hennig et al.   APPLIED MICROBIOLOGY AND BIOTECHNOLOGY

Integrating Biological Redesign: Where Synthetic Biology Came From and Where It Needs to Go

(2014) Jeffrey C. Way et al.   CELL

Synthetic microbial consortia: from systematic analysis to construction and applications

(2014) Hao Song et al.   CHEMICAL SOCIETY REVIEWS

Synthetic analog and digital circuits for cellular computation and memory

(2014) Oliver Purcell et al.   CURRENT OPINION IN BIOTECHNOLOGY

Pseudomonasbiofilms: possibilities of their control

(2014) Jan Masák et al.   FEMS MICROBIOLOGY ECOLOGY

Advances in yeast genome engineering

(2014) Florian David et al.   FEMS YEAST RESEARCH

Recent applications of synthetic biology tools for yeast metabolic engineering

(2014) Michael K. Jensen et al.   FEMS YEAST RESEARCH

Collective sensing and collective responses in quorum-sensing bacteria

(2014) R. Popat et al.   Journal of the Royal Society Interface

Silencing the mob: disrupting quorum sensing as a means to fight plant disease

(2014) Yael Helman et al.   MOLECULAR PLANT PATHOLOGY

How to Make a Synthetic Multicellular Computer

(2014) Javier Macia et al.   PLoS One

Artificially Constructed Quorum-Sensing Circuits Are Used for Subtle Control of Bacterial Population Density

(2014) Zhaoshou Wang et al.   PLoS One

Secreting and Sensing the Same Molecule Allows Cells to Achieve Versatile Social Behaviors

(2014) H. Youk et al.   SCIENCE

Total Synthesis of a Functional Designer Eukaryotic Chromosome

(2014) N. Annaluru et al.   SCIENCE

Integrating artificial with natural cells to translate chemical messages that direct E. coli behaviour

(2014) Roberta Lentini et al.   Nature Communications

Quorum sensing communication between bacteria and human cells: signals, targets, and functions

(2014) Angelika Holm et al.   Frontiers in Plant Science

In silico design and in vivo implementation of yeast gene Boolean gates

(2014) Mario A Marchisio   Journal of Biological Engineering

Acyl-Homoserine Lactone Quorum Sensing: From Evolution to Application

(2013) Martin Schuster et al.   Annual Review of Microbiology

Bacterial quorum sensing: circuits and applications

(2013) Neera Garg et al.   ANTONIE VAN LEEUWENHOEK INTERNATIONAL JOURNAL OF GENERAL AND MOLECULAR MICROBIOLOGY

Consortia-mediated bioprocessing of cellulose to ethanol with a symbiotic Clostridium phytofermentans/yeast co-culture

(2013) Trevor R Zuroff et al.   Biotechnology for Biofuels

Engineering cell–cell signaling

(2013) Katarina Blagovic et al.   CURRENT OPINION IN BIOTECHNOLOGY

Synthetic mammalian gene circuits for biomedical applications

(2013) Haifeng Ye et al.   CURRENT OPINION IN CHEMICAL BIOLOGY

Exploiting Quorum Sensing To Confuse Bacterial Pathogens

(2013) B. LaSarre et al.   MICROBIOLOGY AND MOLECULAR BIOLOGY REVIEWS

Biomedically relevant circuit-design strategies in mammalian synthetic biology

(2013) W. Bacchus et al.   Molecular Systems Biology

Temporal control of self-organized pattern formation without morphogen gradients in bacteria

(2013) S. Payne et al.   Molecular Systems Biology

Synthetic analog computation in living cells

(2013) Ramiz Daniel et al.   NATURE

Synthetic circuits integrating logic and memory in living cells

(2013) Piro Siuti et al.   NATURE BIOTECHNOLOGY

Two- and three-input TALE-based AND logic computation in embryonic stem cells

(2013) Florian Lienert et al.   NUCLEIC ACIDS RESEARCH

A Formalized Design Process for Bacterial Consortia That Perform Logic Computing

(2013) Weiyue Ji et al.   PLoS One

Multicellular Computing Using Conjugation for Wiring

(2013) Angel Goñi-Moreno et al.   PLoS One

Sexual reproduction and mating-type–mediated strain development in the penicillin-producing fungusPenicillium chrysogenum

(2013) Julia Böhm et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Amplifying Genetic Logic Gates

(2013) J. Bonnet et al.   SCIENCE

Temporal and Spatial Properties of a Yeast Multi-Cellular Amplification System Based on Signal Molecule Diffusion

(2013) Michael Jahn et al.   SENSORS

Genetically Programmable Pathogen Sense and Destroy

(2013) Saurabh Gupta et al.   ACS Synthetic Biology

Engineering Multicellular Logic in Bacteria with Metabolic Wires

(2013) Rafael Silva-Rocha et al.   ACS Synthetic Biology

Genetically Encoded Sender–Receiver System in 3D Mammalian Cell Culture

(2013) Andreia Carvalho et al.   ACS Synthetic Biology

Quorum Sensing-Modulated AND-Gate Promoters Control Gene Expression in Response to a Combination of Endogenous and Exogenous Signals

(2013) Jasmine Shong et al.   ACS Synthetic Biology

Reprogramming Microbes to Be Pathogen-Seeking Killers

(2013) In Young Hwang et al.   ACS Synthetic Biology

Mate and fuse: how yeast cells do it

(2013) L. Merlini et al.   Open Biology

Developing symbiotic consortia for lignocellulosic biofuel production

(2012) Trevor R. Zuroff et al.   APPLIED MICROBIOLOGY AND BIOTECHNOLOGY

A modular cell-based biosensor using engineered genetic logic circuits to detect and integrate multiple environmental signals

(2012) Baojun Wang et al.   BIOSENSORS & BIOELECTRONICS

One-pot bioethanol production from cellulose by co-culture of Acremonium cellulolyticus and Saccharomyces cerevisiae

(2012) Enoch Y Park et al.   Biotechnology for Biofuels

Stochastic simulations of a synthetic bacteria-yeast ecosystem

(2012) Konstantinos Biliouris et al.   BMC Systems Biology

Towards synthetic microbial consortia for bioprocessing

(2012) Jasmine Shong et al.   CURRENT OPINION IN BIOTECHNOLOGY

Engineering multicellular traits in synthetic microbial populations

(2012) John S Chuang   CURRENT OPINION IN CHEMICAL BIOLOGY

Construction of synthetic regulatory networks in yeast

(2012) Benjamin A. Blount et al.   FEBS LETTERS

Chemical Mediation of Ternary Interactions Between Marine Holobionts and Their Environment as Exemplified by the Red Alga Delisea pulchra

(2012) Tilmann Harder et al.   JOURNAL OF CHEMICAL ECOLOGY

Towards the rational design of synthetic cells with prescribed population dynamics

(2012) N. Dalchau et al.   Journal of the Royal Society Interface

Quorum sensing in fungi – a review

(2012) Patrícia Albuquerque et al.   MEDICAL MYCOLOGY

Engineering of synthetic intercellular communication systems

(2012) William Bacchus et al.   METABOLIC ENGINEERING

Engineering ecosystems and synthetic ecologies

(2012) Michael T. Mee et al.   Molecular BioSystems

Genetic programs constructed from layered logic gates in single cells

(2012) Tae Seok Moon et al.   NATURE

Synthetic two-way communication between mammalian cells

(2012) William Bacchus et al.   NATURE BIOTECHNOLOGY

Biomolecular computing systems: principles, progress and potential

(2012) Yaakov Benenson   NATURE REVIEWS GENETICS

A tunable zinc finger-based framework for Boolean logic computation in mammalian cells

(2012) Jason J. Lohmueller et al.   NUCLEIC ACIDS RESEARCH

Propagation of 2D Pressure Pulses in Lipid Monolayers and Its Possible Implications for Biology

(2012) J. Griesbauer et al.   PHYSICAL REVIEW LETTERS

A Programmable Escherichia coli Consortium via Tunable Symbiosis

(2012) Alissa Kerner et al.   PLoS One

Synthetic Signal Propagation Through Direct Cell-Cell Interaction

(2012) M. Matsuda et al.   Science Signaling

Distributed computation: the new wave of synthetic biology devices

(2012) Javier Macía et al.   TRENDS IN BIOTECHNOLOGY

Synthetic quorum-sensing circuit to control consortial biofilm formation and dispersal in a microfluidic device

(2012) Seok Hoon Hong et al.   Nature Communications

Functional Display of Complex Cellulosomes on the Yeast Surface via Adaptive Assembly

(2012) Shen-Long Tsai et al.   ACS Synthetic Biology

Engineered E. coli That Detect and Respond to Gut Inflammation through Nitric Oxide Sensing

(2012) Eric J. Archer et al.   ACS Synthetic Biology

Automated Design of Genetic Toggle Switches with Predetermined Bistability

(2012) Shuobing Chen et al.   ACS Synthetic Biology

Genetic Circuit Performance under Conditions Relevant for Industrial Bioreactors

(2012) Felix Moser et al.   ACS Synthetic Biology

Engineered Quorum Sensing Using Pheromone-Mediated Cell-to-Cell Communication in Saccharomyces cerevisiae

(2012) Thomas C. Williams et al.   ACS Synthetic Biology

Engineering microbial consortia to enhance biomining and bioremediation

(2012) Karl D. Brune et al.   Frontiers in Microbiology

Cell-to-cell communication circuits: quantitative analysis of synthetic logic gates

(2012) Marta Hoffman-Sommer   Frontiers in Physiology

Engineered cell-cell communication via DNA messaging

(2012) Monica E Ortiz et al.   Journal of Biological Engineering

Programming microbial population dynamics by engineered cell-cell communication

(2011) Hao Song et al.   Biotechnology Journal

Microbial linguistics: perspectives and applications of microbial cell-to-cell communication

(2011) Robert J. Mitchell et al.   BMB Reports

Designing biological systems: Systems Engineering meets Synthetic Biology

(2011) Sascha Rollié et al.   CHEMICAL ENGINEERING SCIENCE

Asymmetry in Sexual Pheromones Is Not Required for Ascomycete Mating

(2011) Joana Gonçalves-Sá et al.   CURRENT BIOLOGY

Recent progress in consolidated bioprocessing

(2011) Daniel G Olson et al.   CURRENT OPINION IN BIOTECHNOLOGY

Application of the yeast pheromone system for controlled cell-cell communication and signal amplification

(2011) A. Groß et al.   LETTERS IN APPLIED MICROBIOLOGY

Simultaneous cell growth and ethanol production from cellulose by an engineered yeast consortium displaying a functional mini-cellulosome

(2011) Garima Goyal et al.   Microbial Cell Factories

Engineering microbes to sense and eradicate Pseudomonas aeruginosa, a human pathogen

(2011) N. Saeidi et al.   Molecular Systems Biology

Synthetic biology: Division of logic labour

(2011) Bochong Li et al.   NATURE

A sensing array of radically coupled genetic ‘biopixels’

(2011) Arthur Prindle et al.   NATURE

Sequential Establishment of Stripe Patterns in an Expanding Cell Population

(2011) C. Liu et al.   SCIENCE

Noise Reduction by Diffusional Dissipation in a Minimal Quorum Sensing Motif

(2011) Yu Tanouchi et al.   PLoS Computational Biology

Escherichia coli Binary Culture Engineered for Direct Fermentation of Hemicellulose to a Biofuel

(2010) H.-D. Shin et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Surface Display of a Functional Minicellulosome by Intracellular Complementation Using a Synthetic Yeast Consortium and Its Application to Cellulose Hydrolysis and Ethanol Production

(2010) S.-L. Tsai et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Vectors for Glucose-Dependent Protein Expression in Saccharomyces cerevisiae

(2010) Simone Thierfelder et al.   APPLIED BIOCHEMISTRY AND BIOTECHNOLOGY

Applications of quorum sensing in biotechnology

(2010) Swati Choudhary et al.   APPLIED MICROBIOLOGY AND BIOTECHNOLOGY

Biosystems analysis and engineering of microbial consortia for industrial biotechnology

(2010) Wael Sabra et al.   ENGINEERING IN LIFE SCIENCES

Construction of a Genetic Multiplexer to Toggle between Chemosensory Pathways in Escherichia coli

(2010) Tae Seok Moon et al.   JOURNAL OF MOLECULAR BIOLOGY

The Evolution of Sex: a Perspective from the Fungal Kingdom

(2010) S. C. Lee et al.   MICROBIOLOGY AND MOLECULAR BIOLOGY REVIEWS

Distributed biological computation with multicellular engineered networks

(2010) Sergi Regot et al.   NATURE

Robust multicellular computing using genetically encoded NOR gates and chemical ‘wires’

(2010) Alvin Tamsir et al.   NATURE

A synchronized quorum of genetic clocks

(2010) Tal Danino et al.   NATURE

Synthetic biology: applications come of age

(2010) Ahmad S. Khalil et al.   NATURE REVIEWS GENETICS

An Environment-Sensitive Synthetic Microbial Ecosystem

(2010) Bo Hu et al.   PLoS One

Engineered bacterial communication prevents Vibrio cholerae virulence in an infant mouse model

(2010) F. Duan et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Forward engineering of synthetic bio-logical AND gates

(2009) Kavita Iyer Ramalingam et al.   BIOCHEMICAL ENGINEERING JOURNAL

A Synthetic Genetic Edge Detection Program

(2009) Jeffrey J. Tabor et al.   CELL

Engineering multicellular systems by cell–cell communication

(2009) Anand Pai et al.   CURRENT OPINION IN BIOTECHNOLOGY

Perspectives and new directions for the production of bioethanol using consolidated bioprocessing of lignocellulose

(2009) Qi Xu et al.   CURRENT OPINION IN BIOTECHNOLOGY

New developments in microbial interspecies signaling

(2009) Elizabeth Anne Shank et al.   CURRENT OPINION IN MICROBIOLOGY

Flipping DNA to Generate and Regulate Microbial Consortia

(2009) R. Ramadas et al.   GENETICS

Relevance of microbial coculture fermentations in biotechnology

(2009) J. Bader et al.   JOURNAL OF APPLIED MICROBIOLOGY

A novel biosensor for the detection of zearalenone family mycotoxins in milk

(2009) Anna-Liisa Välimaa et al.   JOURNAL OF MICROBIOLOGICAL METHODS

Synthesis of Methyl Halides from Biomass Using Engineered Microbes

(2009) Travis S. Bayer et al.   JOURNAL OF THE AMERICAN CHEMICAL SOCIETY

A synthetic metabolite-based mammalian inter-cell signaling system

(2009) Wilfried Weber et al.   Molecular BioSystems

Engineered single- and multi-cell chemotaxis pathways in E. coli

(2009) Shalom D Goldberg et al.   Molecular Systems Biology

Snowdrift game dynamics and facultative cheating in yeast

(2009) Jeff Gore et al.   NATURE

Next-generation synthetic gene networks

(2009) Timothy K Lu et al.   NATURE BIOTECHNOLOGY

Spatiotemporal modulation of biodiversity in a synthetic chemical-mediated ecosystem

(2009) Hao Song et al.   Nature Chemical Biology

Engineering for biofuels: exploiting innate microbial capacity or importing biosynthetic potential?

(2009) Hal Alper et al.   NATURE REVIEWS MICROBIOLOGY

Timing Cellular Decision Making Under Noise via Cell–Cell Communication

(2009) Aneta Koseska et al.   PLoS One

An externally tunable bacterial band-pass filter

(2009) T. Sohka et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Synthetic Gene Networks That Count

(2009) A. E. Friedland et al.   SCIENCE

Synthetic control of a fitness tradeoff in yeast nitrogen metabolism

(2009) Travis S Bayer et al.   Journal of Biological Engineering

Construction and Enhancement of a Minimal Genetic AND Logic Gate

(2008) D. J. Sayut et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Detecting AhR ligands in sediments using bioluminescent reporter yeast

(2008) Piia Leskinen et al.   BIOSENSORS & BIOELECTRONICS

From unicellular properties to multicellular behavior: bacteria quorum sensing circuitry and applications

(2008) Sara Hooshangi et al.   CURRENT OPINION IN BIOTECHNOLOGY

Removal of Methyl Parathion from Artificial Off-Gas Using a Bioreactor Containing a Constructed Microbial Consortium

(2008) Lin Li et al.   ENVIRONMENTAL SCIENCE & TECHNOLOGY

A synthetic Escherichia coli predator–prey ecosystem

(2008) Frederick K Balagaddé et al.   Molecular Systems Biology

Inter-kingdom signalling: communication between bacteria and their hosts

(2008) David T. Hughes et al.   NATURE REVIEWS MICROBIOLOGY

Defined spatial structure stabilizes a synthetic multispecies bacterial community

(2008) H. J. Kim et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Using Engineered Scaffold Interactions to Reshape MAP Kinase Pathway Signaling Dynamics

(2008) C. J. Bashor et al.   SCIENCE

Higher-Order Cellular Information Processing with Synthetic RNA Devices

(2008) M. N. Win et al.   SCIENCE

Engineering microbial consortia: a new frontier in synthetic biology

(2008) Katie Brenner et al.   TRENDS IN BIOTECHNOLOGY

Construction of an artificial intercellular communication network using the nitric oxide signaling elements in mammalian cells

(2007) Wei-Dong Wang et al.   EXPERIMENTAL CELL RESEARCH