Complete genome sequence of the marine methyl-halide oxidizing Leisingera methylohalidivorans type strain (DSM 14336T), a representative of the Roseobacter clade

Extrachromosomal, extraordinary and essential—the plasmids of the Roseobacter clade

(2013) Jörn Petersen et al.   APPLIED MICROBIOLOGY AND BIOTECHNOLOGY

opm: an R package for analysing OmniLog(R) phenotype microarray data

(2013) L. A. I. Vaas et al.   BIOINFORMATICS

Genome sequence-based species delimitation with confidence intervals and improved distance functions

(2013) Jan P Meier-Kolthoff et al.   BMC BIOINFORMATICS

Impacts of pr-10a Overexpression at the Molecular and the Phenotypic Level

(2013) Lea Vaas et al.   INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES

Genome sequence of Phaeobacter daeponensis type strain (DSM 23529T), a facultatively anaerobic bacterium isolated from marine sediment, and emendation of Phaeobacter daeponensis

(2013) Marco Dogs et al.   Standards in Genomic Sciences

Genome sequence of the Leisingera aquimarina type strain (DSM 24565T), a member of the marine Roseobacter clade rich in extrachromosomal elements

(2013) Thomas Riedel et al.   Standards in Genomic Sciences

Genome sequence of the phage-gene rich marine Phaeobacter arcticus type strain DSM 23566T

(2013) Heike M. Freese et al.   Standards in Genomic Sciences

Genome sequence of Phaeobacter inhibens type strain (T5T), a secondary metabolite producing representative of the marine Roseobacter clade, and emendation of the species description of Phaeobacter inhibens

(2013) Marco Dogs et al.   Standards in Genomic Sciences

Genome sequence of Phaeobacter caeruleus type strain (DSM 24564T), a surface-associated member of the marine Roseobacter clade

(2013) Paul G. Beyersmann et al.   Standards in Genomic Sciences

Genetic Analysis of the Upper Phenylacetate Catabolic Pathway in the Production of Tropodithietic Acid by Phaeobacter gallaeciensis

(2012) Martine Berger et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Visualization and Curve-Parameter Estimation Strategies for Efficient Exploration of Phenotype Microarray Kinetics

(2012) Lea A. I. Vaas et al.   PLoS One

The Fast Changing Landscape of Sequencing Technologies and Their Impact on Microbial Genome Assemblies and Annotation

(2012) Konstantinos Mavromatis et al.   PLoS One

The DNA Bank Network: The Start from a German Initiative

(2011) Birgit Gemeinholzer et al.   BIOPRESERVATION AND BIOBANKING

The Genomes OnLine Database (GOLD) v.4: status of genomic and metagenomic projects and their associated metadata

(2011) I. Pagani et al.   NUCLEIC ACIDS RESEARCH

Complete genome sequence of Isosphaera pallida type strain (IS1BT)

(2011) Markus Göker et al.   Standards in Genomic Sciences

Non-contiguous finished genome sequence and contextual data of the filamentous soil bacterium Ktedonobacter racemifer type strain (SOSP1-21T)

(2011) Yun-juan Chang et al.   Standards in Genomic Sciences

The Genomic Standards Consortium

(2011) Dawn Field et al.   PLOS BIOLOGY

Prodigal: prokaryotic gene recognition and translation initiation site identification

(2010) Doug Hyatt et al.   BMC BIOINFORMATICS

Origin and Evolution of a Novel DnaA-Like Plasmid Replication Type in Rhodobacterales

(2010) J. Petersen et al.   MOLECULAR BIOLOGY AND EVOLUTION

GenePRIMP: a gene prediction improvement pipeline for prokaryotic genomes

(2010) Amrita Pati et al.   NATURE METHODS

What is type VI secretion doing in all those bugs?

(2010) Sandra Schwarz et al.   TRENDS IN MICROBIOLOGY

Standard operating procedure for calculating genome-to-genome distances based on high-scoring segment pairs

(2010) Alexander F. Auch et al.   Standards in Genomic Sciences

Digital DNA-DNA hybridization for microbial species delineation by means of genome-to-genome sequence comparison

(2010) Alexander F. Auch et al.   Standards in Genomic Sciences

Surface Colonization by Marine Roseobacters: Integrating Genotype and Phenotype

(2009) R. N. Slightom et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

IMG ER: a system for microbial genome annotation expert review and curation

(2009) Victor M. Markowitz et al.   BIOINFORMATICS

Diversity and evolution ofrepABCtype plasmids inRhodobacterales

(2009) Jörn Petersen et al.   ENVIRONMENTAL MICROBIOLOGY

Leisingera nanhaiensis sp. nov., isolated from marine sediment

(2009) F. Sun et al.   INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY

The DOE-JGI Standard Operating Procedure for the Annotations of Microbial Genomes

(2009) Konstantinos Mavromatis et al.   Standards in Genomic Sciences

Diversity, ecology, and genomics of the Roseobacter clade: a short overview

(2008) Thorsten Brinkhoff et al.   ARCHIVES OF MICROBIOLOGY

ALLPATHS: De novo assembly of whole-genome shotgun microreads

(2008) J. Butler et al.   GENOME RESEARCH

Velvet: Algorithms for de novo short read assembly using de Bruijn graphs

(2008) D. R. Zerbino et al.   GENOME RESEARCH

Leisingera aquimarina sp. nov., isolated from a marine electroactive biofilm, and emended descriptions of Leisingera methylohalidivorans Schaefer et al. 2002, Phaeobacter daeponensis Yoon et al. 2007 and Phaeobacter inhibens Martens et al. 2006

(2008) I. Vandecandelaere et al.   INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY