Visualization and Curve-Parameter Estimation Strategies for Efficient Exploration of Phenotype Microarray Kinetics

grofit: Fitting Biological Growth Curves withR

(2015) Matthias Kahm et al.   Journal of Statistical Software

PheMaDB: A solution for storage, retrieval, and analysis of high throughput phenotype data

(2011) Wenling E Chang et al.   BMC BIOINFORMATICS

Monotonicity-constrained species distribution models

(2011) Benjamin Hofner et al.   ECOLOGY

Bridging the Gap between Fluxomics and Industrial Biotechnology

(2011) Xueyang Feng et al.   JOURNAL OF BIOMEDICINE AND BIOTECHNOLOGY

Biomarkers in the Age of Omics: Time for a Systems Biology Approach

(2011) Mones S. Abu-Asab et al.   OMICS-A JOURNAL OF INTEGRATIVE BIOLOGY

Lack of the Delta Subunit of RNA Polymerase Increases Virulence Related Traits of Streptococcus mutans

(2011) Xiaoli Xue et al.   PLoS One

Lipidomics: New Tools and Applications

(2010) Markus R. Wenk   CELL

Metabolic reconstruction, constraint-based analysis and game theory to probe genome-scale metabolic networks

(2010) Eytan Ruppin et al.   CURRENT OPINION IN BIOTECHNOLOGY

Engineering in complex systems

(2010) Matthias Bujara et al.   CURRENT OPINION IN BIOTECHNOLOGY

Metabolic networks, microbial ecology and ‘omics’ technologies: towards understanding in situ biodegradation processes

(2010) Ramiro Vilchez-Vargas et al.   ENVIRONMENTAL MICROBIOLOGY

Statistical Methods for Comparative Phenomics Using High-Throughput Phenotype Microarrays

(2010) Joseph Sturino et al.  

Comparison of phenotypic (Biolog System) and genotypic (random amplified polymorphic DNA-polymerase chain reaction, RAPD-PCR, and amplified fragment length polymorphism, AFLP) methods for typing Lactobacillus plantarum isolates from raw vegetables and fruits

(2010) R. Di Cagno et al.   INTERNATIONAL JOURNAL OF FOOD MICROBIOLOGY

Comparative Analysis of Metabolic Networks Provides Insight into the Evolution of Plant Pathogenic and Nonpathogenic Lifestyles in Pseudomonas

(2010) A. Mithani et al.   MOLECULAR BIOLOGY AND EVOLUTION

Babelomics: an integrative platform for the analysis of transcriptomics, proteomics and genomic data with advanced functional profiling

(2010) Ignacio Medina et al.   NUCLEIC ACIDS RESEARCH

Cryptic prophages help bacteria cope with adverse environments

(2010) Xiaoxue Wang et al.   Nature Communications

Nonlinear Models for Longitudinal Data

(2009) Jan Serroyen et al.   AMERICAN STATISTICIAN

What are genes “for” or where are traits “from”? What is the question?

(2009) Anne V. Buchanan et al.   BIOESSAYS

integrOmics: an R package to unravel relationships between two omics datasets

(2009) Kim-Anh Lê Cao et al.   BIOINFORMATICS

The era of 'omics unlimited

(2009) Raj P. Kandpal et al.   BIOTECHNIQUES

Characterization of halophiles isolated from solar salterns in Baja California, Mexico

(2009) Shereen Sabet et al.   EXTREMOPHILES

Integrating multiple 'omics' analysis for microbial biology: application and methodologies

(2009) W. Zhang et al.   MICROBIOLOGY-SGM

Legionella pneumophilacouples fatty acid flux to microbial differentiation and virulence

(2009) Rachel L. Edwards et al.   MOLECULAR MICROBIOLOGY

A genome-scale metabolic reconstruction of Pseudomonas putida KT2440: iJN746 as a cell factory

(2008) Juan Nogales et al.   BMC Systems Biology

A Primer in Longitudinal Data Analysis

(2008) Garrett M. Fitzmaurice et al.   CIRCULATION

Genome-scale analyses of health-promoting bacteria: probiogenomics

(2008) Marco Ventura et al.   NATURE REVIEWS MICROBIOLOGY

Genome-Scale Reconstruction and Analysis of the Pseudomonas putida KT2440 Metabolic Network Facilitates Applications in Biotechnology

(2008) Jacek Puchałka et al.   PLoS Computational Biology