Genome sequence of Phaeobacter caeruleus type strain (DSM 24564T), a surface-associated member of the marine Roseobacter clade

Extrachromosomal, extraordinary and essential—the plasmids of the Roseobacter clade

(2013) Jörn Petersen et al.   APPLIED MICROBIOLOGY AND BIOTECHNOLOGY

Genome sequence-based species delimitation with confidence intervals and improved distance functions

(2013) Jan P Meier-Kolthoff et al.   BMC BIOINFORMATICS

Production of the Antimicrobial Secondary Metabolite Indigoidine Contributes to Competitive Surface Colonization by the Marine Roseobacter Phaeobacter sp. Strain Y4I

(2012) W. Nathan Cude et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Think pink: photosynthesis, plasmids and theRoseobacterclade

(2012) Jörn Petersen et al.   ENVIRONMENTAL MICROBIOLOGY

Phaeobacter gallaeciensis genomes from globally opposite locations reveal high similarity of adaptation to surface life

(2012) Sebastian Thole et al.   ISME Journal

Visualization and Curve-Parameter Estimation Strategies for Efficient Exploration of Phenotype Microarray Kinetics

(2012) Lea A. I. Vaas et al.   PLoS One

The Fast Changing Landscape of Sequencing Technologies and Their Impact on Microbial Genome Assemblies and Annotation

(2012) Konstantinos Mavromatis et al.   PLoS One

The DNA Bank Network: The Start from a German Initiative

(2011) Birgit Gemeinholzer et al.   BIOPRESERVATION AND BIOBANKING

Tropodithietic Acid Production in Phaeobacter gallaeciensis Is Regulated by N-Acyl Homoserine Lactone-Mediated Quorum Sensing

(2011) M. Berger et al.   JOURNAL OF BACTERIOLOGY

The Genomes OnLine Database (GOLD) v.4: status of genomic and metagenomic projects and their associated metadata

(2011) I. Pagani et al.   NUCLEIC ACIDS RESEARCH

Prodigal: prokaryotic gene recognition and translation initiation site identification

(2010) Doug Hyatt et al.   BMC BIOINFORMATICS

Siderophores from Neighboring Organisms Promote the Growth of Uncultured Bacteria

(2010) Anthony D'Onofrio et al.   CHEMISTRY & BIOLOGY

Genome Sequences of Oceanicola granulosus HTCC2516T and Oceanicola batsensis HTCC2597T

(2010) J. C. Thrash et al.   JOURNAL OF BACTERIOLOGY

Origin and Evolution of a Novel DnaA-Like Plasmid Replication Type in Rhodobacterales

(2010) J. Petersen et al.   MOLECULAR BIOLOGY AND EVOLUTION

GenePRIMP: a gene prediction improvement pipeline for prokaryotic genomes

(2010) Amrita Pati et al.   NATURE METHODS

What is type VI secretion doing in all those bugs?

(2010) Sandra Schwarz et al.   TRENDS IN MICROBIOLOGY

Standard operating procedure for calculating genome-to-genome distances based on high-scoring segment pairs

(2010) Alexander F. Auch et al.   Standards in Genomic Sciences

Digital DNA-DNA hybridization for microbial species delineation by means of genome-to-genome sequence comparison

(2010) Alexander F. Auch et al.   Standards in Genomic Sciences

Diversity and evolution ofrepABCtype plasmids inRhodobacterales

(2009) Jörn Petersen et al.   ENVIRONMENTAL MICROBIOLOGY

Oceanicola nitratireducens sp. nov., a marine alphaproteobacterium isolated from the South China Sea

(2009) Q. Zheng et al.   INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY

Seohaeicola saemankumensis gen. nov., sp. nov., isolated from a tidal flat

(2009) J.-H. Yoon et al.   INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY

Phaeobacter caeruleus sp. nov., a blue-coloured, colony-forming bacterium isolated from a marine electroactive biofilm

(2009) I. Vandecandelaere et al.   INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY

Oceanicola pacificus sp. nov., isolated from a deep-sea pyrene-degrading consortium

(2009) J. Yuan et al.   INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY

The DOE-JGI Standard Operating Procedure for the Annotations of Microbial Genomes

(2009) Konstantinos Mavromatis et al.   Standards in Genomic Sciences

Diversity, ecology, and genomics of the Roseobacter clade: a short overview

(2008) Thorsten Brinkhoff et al.   ARCHIVES OF MICROBIOLOGY

ALLPATHS: De novo assembly of whole-genome shotgun microreads

(2008) J. Butler et al.   GENOME RESEARCH

Velvet: Algorithms for de novo short read assembly using de Bruijn graphs

(2008) D. R. Zerbino et al.   GENOME RESEARCH

Leisingera aquimarina sp. nov., isolated from a marine electroactive biofilm, and emended descriptions of Leisingera methylohalidivorans Schaefer et al. 2002, Phaeobacter daeponensis Yoon et al. 2007 and Phaeobacter inhibens Martens et al. 2006

(2008) I. Vandecandelaere et al.   INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY

Alteromonas genovensis sp. nov., isolated from a marine electroactive biofilm and emended description of Alteromonas macleodii Baumann et al. 1972 (Approved Lists 1980)

(2008) I. Vandecandelaere et al.   INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY

Phaeobacter arcticus sp. nov., a psychrophilic bacterium isolated from the Arctic

(2008) D.-C. Zhang et al.   INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY

The minimum information about a genome sequence (MIGS) specification

(2008) Dawn Field et al.   NATURE BIOTECHNOLOGY

A Rapid Bootstrap Algorithm for the RAxML Web Servers

(2008) Alexandros Stamatakis et al.   SYSTEMATIC BIOLOGY