Comparative genomics of Lactobacillus kefiranofaciens ZW3 and related members of Lactobacillus. spp reveal adaptations to dairy and gut environments

Advances in the genomics and metabolomics of dairy lactobacilli: A review

(2017) Ewelina Stefanovic et al.   FOOD MICROBIOLOGY

In vitro and in vivo evaluation of the probiotic attributes of Lactobacillus kefiranofaciens XL10 isolated from Tibetan kefir grain

(2016) Zhuqing Xing et al.   APPLIED MICROBIOLOGY AND BIOTECHNOLOGY

UDP-glucose pyrophosphorylase influences polysaccharide synthesis, cell wall components, and hyphal branching in Ganoderma lucidum via regulation of the balance between glucose-1-phosphate and UDP-glucose

(2015) Mengjiao Li et al.   FUNGAL GENETICS AND BIOLOGY

Reconstruction and analysis of the genome-scale metabolic model of Lactobacillus casei LC2W

(2015) Nan Xu et al.   GENE

Improvement of exopolysaccharide production in Lactobacillus casei LC2W by overexpression of NADH oxidase gene

(2015) Nan Li et al.   MICROBIOLOGICAL RESEARCH

The Phyre2 web portal for protein modeling, prediction and analysis

(2015) Lawrence A Kelley et al.   Nature Protocols

IslandViewer 3: more flexible, interactive genomic island discovery, visualization and analysis: Figure 1.

(2015) Bhavjinder K. Dhillon et al.   NUCLEIC ACIDS RESEARCH

Bacterial exopolysaccharides: biosynthesis pathways and engineering strategies

(2015) Jochen Schmid et al.   Frontiers in Microbiology

Comparative genomics of the dairy isolate Streptococcus macedonicus ACA-DC 198 against related members of the Streptococcus bovis/Streptococcus equinus complex

(2014) Konstantinos Papadimitriou et al.   BMC GENOMICS

REBASE—a database for DNA restriction and modification: enzymes, genes and genomes

(2014) Richard J. Roberts et al.   NUCLEIC ACIDS RESEARCH

Catabolism ofN-Acetylneuraminic Acid, a Fitness Function of the Food-Borne Lactic Acid Bacterium Lactobacillus sakei, Involves Two Newly Characterized Proteins

(2013) Jamila Anba-Mondoloni et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Genome Instability in Lactobacillus rhamnosus GG

(2013) Wilbert Sybesma et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

H+-ATPase-Defective Variants ofLactobacillus delbrueckiisubsp. bulgaricusContribute to Inhibition of Postacidification of Yogurt during Chilled Storage

(2013) Xinhui Wang et al.   JOURNAL OF FOOD SCIENCE

Sticking together: building a biofilm the Bacillus subtilis way

(2013) Hera Vlamakis et al.   NATURE REVIEWS MICROBIOLOGY

The SEED and the Rapid Annotation of microbial genomes using Subsystems Technology (RAST)

(2013) Ross Overbeek et al.   NUCLEIC ACIDS RESEARCH

Lactobacillus paracasei Comparative Genomics: Towards Species Pan-Genome Definition and Exploitation of Diversity

(2013) Tamara Smokvina et al.   PLoS One

CRISPR-Cas and restriction–modification systems are compatible and increase phage resistance

(2013) Marie-Ève Dupuis et al.   Nature Communications

Comparative Genomic and Functional Analysis of 100 Lactobacillus rhamnosus Strains and Their Comparison with Strain GG

(2013) François P. Douillard et al.   PLoS Genetics

Analysis of the Lactobacillus casei supragenome and its influence in species evolution and lifestyle adaptation

(2012) Jeff R Broadbent et al.   BMC GENOMICS

Characterization of exopolysaccharide produced by Lactobacillus kefiranofaciens ZW3 isolated from Tibet kefir – Part II

(2012) Zaheer Ahmed et al.   FOOD HYDROCOLLOIDS

CDD: conserved domains and protein three-dimensional structure

(2012) Aron Marchler-Bauer et al.   NUCLEIC ACIDS RESEARCH

Effect of Heat-Inactivated Kefir-Isolated Lactobacillus kefiranofaciens M1 on Preventing an Allergic Airway Response in Mice

(2011) Wei-Sheng Hong et al.   JOURNAL OF AGRICULTURAL AND FOOD CHEMISTRY

Complete Genome Sequence of Lactobacillus kefiranofaciens ZW3

(2011) Y. Wang et al.   JOURNAL OF BACTERIOLOGY

Comparative genomics of Lactobacillus sakei with emphasis on strains from meat

(2011) O. Ludvig Nyquist et al.   MOLECULAR GENETICS AND GENOMICS

The Antiallergic Effect of Kefir Lactobacilli

(2010) Wei-Sheng Hong et al.   JOURNAL OF FOOD SCIENCE

GenePRIMP: a gene prediction improvement pipeline for prokaryotic genomes

(2010) Amrita Pati et al.   NATURE METHODS

progressiveMauve: Multiple Genome Alignment with Gene Gain, Loss and Rearrangement

(2010) Aaron E. Darling et al.   PLoS One

Comparative genomics of Lactobacillus

(2010) Ravi Kant et al.   Microbial Biotechnology

Identification of a Gene Cluster for the Biosynthesis of a Long, Galactose-Rich Exopolysaccharide in Lactobacillus rhamnosus GG and Functional Analysis of the Priming Glycosyltransferase

(2009) S. Lebeer et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

EDGAR: A software framework for the comparative analysis of prokaryotic genomes

(2009) Jochen Blom et al.   BMC BIOINFORMATICS

Comparative genomics of lactic acid bacteria reveals a niche-specific gene set

(2009) Orla O'Sullivan et al.   BMC MICROBIOLOGY

Analysis of the Genome Sequence of Lactobacillus gasseri ATCC 33323 Reveals the Molecular Basis of an Autochthonous Intestinal Organism

(2008) M. A. Azcarate-Peril et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

DNAPlotter: circular and linear interactive genome visualization

(2008) T. Carver et al.   BIOINFORMATICS

Physicochemical properties of exopolysaccharide produced by Lactobacillus kefiranofaciens ZW3 isolated from Tibet kefir

(2008) Yanping Wang et al.   INTERNATIONAL JOURNAL OF BIOLOGICAL MACROMOLECULES

Functional characteristics of Lactobacillus spp. from traditional Maasai fermented milk products in Kenya

(2008) J MATHARA et al.   INTERNATIONAL JOURNAL OF FOOD MICROBIOLOGY

Glucosyltransferase A (GtfA) and inulosucrase (Inu) of Lactobacillus reuteri TMW1.106 contribute to cell aggregation, in vitro biofilm formation, and colonization of the mouse gastrointestinal tract

(2008) J. Walter et al.   MICROBIOLOGY-SGM

CRISPRcompar: a website to compare clustered regularly interspaced short palindromic repeats

(2008) I. Grissa et al.   NUCLEIC ACIDS RESEARCH

Amino acid decarboxylation by Lactobacillus curvatus CTC273 affected by the pH and glucose availability

(2007) Sara Bover Cid et al.   FOOD MICROBIOLOGY