Real-time iTRAQ-based proteome profiling revealed the central metabolism involved in nitrogen starvation induced lipid accumulation in microalgae

Comparing the Diagnostic Classification Accuracy of iTRAQ, Peak-Area, Spectral-Counting, and emPAI Methods for Relative Quantification in Expression Proteomics

(2016) Adam A. Dowle et al.   JOURNAL OF PROTEOME RESEARCH

Proteomics analysis of high lipid-producing strain Mucor circinelloides WJ11: an explanation for the mechanism of lipid accumulation at the proteomic level

(2016) Xin Tang et al.   Microbial Cell Factories

iTRAQ-Based Quantitative Proteomic Comparison of Early- and Late-Passage Human Dermal Papilla Cell Secretome in Relation to Inducing Hair Follicle Regeneration

(2016) Huan Zhang et al.   PLoS One

Comparative transcriptomics reveals molecular components associated with differential lipid accumulation between microalgal sp., Scenedesmus dimorphus and Scenedesmus quadricauda

(2016) Tamanna Sharma et al.   Algal Research-Biomass Biofuels and Bioproducts

Nitrogen-Deficiency Stress Induces Protein Expression Differentially in Low-N Tolerant and Low-N Sensitive Maize Genotypes

(2016) Muslima Nazir et al.   Frontiers in Plant Science

Whole-cell response to nitrogen deprivation in the diatomPhaeodactylum tricornutum

(2015) Leila Alipanah et al.   JOURNAL OF EXPERIMENTAL BOTANY

Identification of regulatory network hubs that control lipid metabolism inChlamydomonas reinhardtii

(2015) Mahmoud Gargouri et al.   JOURNAL OF EXPERIMENTAL BOTANY

2016 update of the PRIDE database and its related tools

(2015) Juan Antonio Vizcaíno et al.   NUCLEIC ACIDS RESEARCH

Physiological implications of arginine metabolism in plants

(2015) Gudrun Winter et al.   Frontiers in Plant Science

Stress Responses from the Endoplasmic Reticulum in Cancer

(2015) Hironori Kato et al.   Frontiers in Oncology

Process Engineering for High-Cell-Density Cultivation of Lipid Rich Microalgal Biomass of Chlorella sp. FC2 IITG

(2014) Muthusivaramapandian Muthuraj et al.   BioEnergy Research

Preferential utilization of intracellular nutrients supports microalgal growth under nutrient starvation: Multi-nutrient mechanistic model and experimental validation

(2014) Basavaraj Palabhanvi et al.   BIORESOURCE TECHNOLOGY

Oil accumulation mechanisms of the oleaginous microalga Chlorella protothecoides revealed through its genome, transcriptomes, and proteomes

(2014) Chunfang Gao et al.   BMC GENOMICS

A Simple Protein Extraction Method for Proteomic Analysis of Diverse Biological Specimens

(2014) Panga Reddy et al.   Current Proteomics

Evaluation of indigenous microalgal isolate Chlorella sp. FC2 IITG as a cell factory for biodiesel production and scale up in outdoor conditions

(2014) Muthusivaramapandian Muthuraj et al.   JOURNAL OF INDUSTRIAL MICROBIOLOGY & BIOTECHNOLOGY

Comparative proteomics reveals proteins impacted by nitrogen deprivation in wild-type and high lipid-accumulating mutant strains of Tisochrysis lutea

(2014) M. Garnier et al.   Journal of Proteomics

Choreography of Transcriptomes and Lipidomes of Nannochloropsis Reveals the Mechanisms of Oil Synthesis in Microalgae

(2014) J. Li et al.   PLANT CELL

Methylcrotonyl-CoA Carboxylase Regulates Triacylglycerol Accumulation in the Model Diatom Phaeodactylum tricornutum

(2014) F. Ge et al.   PLANT CELL

The Regulation of Photosynthetic Structure and Function during Nitrogen Deprivation inChlamydomonas reinhardtii

(2014) Matthew T. Juergens et al.   PLANT PHYSIOLOGY

Simultaneous Production of Biodiesel and Free Lutein fromChlorella vulgaris

(2013) C. Prommuak et al.   CHEMICAL ENGINEERING & TECHNOLOGY

The biosynthesis of nitrogen-, sulfur-, and high-carbon chain-containing sugars

(2013) Chia-I. Lin et al.   CHEMICAL SOCIETY REVIEWS

Supplementation ofSpirulina platensisandChlorella vulgarisAlgae into Probiotic Fermented Milks

(2013) H. Beheshtipour et al.   COMPREHENSIVE REVIEWS IN FOOD SCIENCE AND FOOD SAFETY

Central Carbon Metabolism and Electron Transport in Chlamydomonas reinhardtii: Metabolic Constraints for Carbon Partitioning between Oil and Starch

(2013) Xenie Johnson et al.   EUKARYOTIC CELL

Proteomics to reveal metabolic network shifts towards lipid accumulation following nitrogen deprivation in the diatom Phaeodactylum tricornutum

(2013) Zhi-Kai Yang et al.   JOURNAL OF APPLIED PHYCOLOGY

Proteomic analysis of Chlorella vulgaris: Potential targets for enhanced lipid accumulation

(2013) Michael T. Guarnieri et al.   Journal of Proteomics

Systemic Cold Stress Adaptation ofChlamydomonas reinhardtii

(2013) Luis Valledor et al.   MOLECULAR & CELLULAR PROTEOMICS

Emerging concept for the role of photorespiration as an important part of abiotic stress response

(2013) I. Voss et al.   PLANT BIOLOGY

Systems-Level Analysis of Nitrogen Starvation-Induced Modifications of Carbon Metabolism in a Chlamydomonas reinhardtii Starchless Mutant

(2013) I. K. Blaby et al.   PLANT CELL

Responses of Nannochloropsis oceanica IMET1 to Long-Term Nitrogen Starvation and Recovery

(2013) H.-P. Dong et al.   PLANT PHYSIOLOGY

Nitrogen Starvation Induced Oxidative Stress in an Oil-Producing Green Alga Chlorella sorokiniana C3

(2013) Yun-Ming Zhang et al.   PLoS One

Phospholipid Metabolism in an Industry Microalga Chlorella sorokiniana: The Impact of Inoculum Sizes

(2013) Shuhuan Lu et al.   PLoS One

Metabolic engineering of lipid catabolism increases microalgal lipid accumulation without compromising growth

(2013) E. M. Trentacoste et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Patterns of carbohydrate and fatty acid changes under nitrogen starvation in the microalgae Haematococcus pluvialis and Nannochloropsis sp.

(2012) Lee Recht et al.   APPLIED MICROBIOLOGY AND BIOTECHNOLOGY

Quantitative proteomic profiling reveals photosynthesis responsible for inoculum size dependent variation inChlorella sorokiniana

(2012) Qian Ma et al.   BIOTECHNOLOGY AND BIOENGINEERING

Transcriptomic analysis of the oleaginous microalga Neochloris oleoabundans reveals metabolic insights into triacylglyceride accumulation

(2012) Hamid Rismani-Yazdi et al.   Biotechnology for Biofuels

In silico design of targeted SRM-based experiments

(2012) Sven Nahnsen et al.   BMC BIOINFORMATICS

Proteome dynamics and early salt stress response of the photosynthetic organism Chlamydomonas reinhardtii

(2012) Guido Mastrobuoni et al.   BMC GENOMICS

Effects of Chlorella vulgaris and Arthrospira platensis addition on viability of probiotic bacteria in yogurt and its biochemical properties

(2012) Hannane Beheshtipour et al.   EUROPEAN FOOD RESEARCH AND TECHNOLOGY

A Strategy for Large-Scale Phosphoproteomics and SRM-Based Validation of Human Breast Cancer Tissue Samples

(2012) Ryohei Narumi et al.   JOURNAL OF PROTEOME RESEARCH

Metabolic and gene expression changes triggered by nitrogen deprivation in the photoautotrophically grown microalgae Chlamydomonas reinhardtii and Coccomyxa sp. C-169

(2012) Joseph Msanne et al.   PHYTOCHEMISTRY

A Galactoglycerolipid Lipase Is Required for Triacylglycerol Accumulation and Survival Following Nitrogen Deprivation in Chlamydomonas reinhardtii

(2012) X. Li et al.   PLANT CELL

Phospholipid:Diacylglycerol Acyltransferase Is a Multifunctional Enzyme Involved in Membrane Lipid Turnover and Degradation While Synthesizing Triacylglycerol in the Unicellular Green Microalga Chlamydomonas reinhardtii

(2012) K. Yoon et al.   PLANT CELL

Proteomic Investigation of Falciparum and Vivax Malaria for Identification of Surrogate Protein Markers

(2012) Sandipan Ray et al.   PLoS One

A comprehensive review on biodiesel as an alternative energy resource and its characteristics

(2012) A.E. Atabani et al.   RENEWABLE & SUSTAINABLE ENERGY REVIEWS

Cancer Cell Metabolism: One Hallmark, Many Faces

(2012) Jason R. Cantor et al.   Cancer Discovery

Cyanobacteria and microalgae: A positive prospect for biofuels

(2011) Asha Parmar et al.   BIORESOURCE TECHNOLOGY

Over-expressing the C3 photosynthesis cycle enzyme Sedoheptulose-1-7 Bisphosphatase improves photosynthetic carbon gain and yield under fully open air CO2 fumigation (FACE)

(2011) David M Rosenthal et al.   BMC PLANT BIOLOGY

Proteome Turnover in the Green Alga Ostreococcus tauri by Time Course 15N Metabolic Labeling Mass Spectrometry

(2011) Sarah F. Martin et al.   JOURNAL OF PROTEOME RESEARCH

Taming the isobaric tagging elephant in the room in quantitative proteomics

(2011) Andy Christoforou et al.   NATURE METHODS

The Response of Diatom Central Carbon Metabolism to Nitrogen Starvation Is Different from That of Green Algae and Higher Plants

(2011) N. L. Hockin et al.   PLANT PHYSIOLOGY

Proteomic analysis of a model unicellular green alga, Chlamydomonas reinhardtii, during short-term exposure to irradiance stress reveals significant down regulation of several heat-shock proteins

(2011) Bancha Mahong et al.   PLANTA

Nitrogen deprivation results in photosynthetic hydrogen production in Chlamydomonas reinhardtii

(2011) Gabriele Philipps et al.   PLANTA

Examination of Triacylglycerol Biosynthetic Pathways via De Novo Transcriptomic and Proteomic Analyses in an Unsequenced Microalga

(2011) Michael T. Guarnieri et al.   PLoS One

Microalgae for the production of bulk chemicals and biofuels

(2010) Rene H Wijffels et al.   Biofuels Bioproducts & Biorefining-Biofpr

Systematic investigation of biomass and lipid productivity by microalgae in photobioreactors for biodiesel application

(2010) J. Pruvost et al.   BIORESOURCE TECHNOLOGY

Acyl-CoA Dehydrogenase 9 Is Required for the Biogenesis of Oxidative Phosphorylation Complex I

(2010) Jessica Nouws et al.   Cell Metabolism

Microalgae as biodiesel & biomass feedstocks: Review & analysis of the biochemistry, energetics & economics

(2010) Peter J. le B. Williams et al.   Energy & Environmental Science

A comparison of the accuracy of iTRAQ quantification by nLC-ESI MSMS and nLC-MALDI MSMS methods

(2010) Sally L. Shirran et al.   Journal of Proteomics

Algal biorefinery-based industry: an approach to address fuel and food insecurity for a carbon-smart world

(2010) Bobban Subhadra et al.   JOURNAL OF THE SCIENCE OF FOOD AND AGRICULTURE

Plant-mPLoc: A Top-Down Strategy to Augment the Power for Predicting Plant Protein Subcellular Localization

(2010) Kuo-Chen Chou et al.   PLoS One

An Outlook on Microalgal Biofuels

(2010) R. H. Wijffels et al.   SCIENCE

Tumor suppressors and cell metabolism: a recipe for cancer growth

(2009) R. G. Jones et al.   GENES & DEVELOPMENT

iTRAQ Underestimation in Simple and Complex Mixtures: “The Good, the Bad and the Ugly”

(2009) Saw Yen Ow et al.   JOURNAL OF PROTEOME RESEARCH

A New Chlorophyll Degradation Pathway

(2009) N. A. Eckardt   PLANT CELL

The chloroplastic lipocalin AtCHL prevents lipid peroxidation and protects Arabidopsis against oxidative stress

(2009) Gabriel Levesque-Tremblay et al.   PLANT JOURNAL

Biofuels from microalgae—A review of technologies for production, processing, and extractions of biofuels and co-products

(2009) Liam Brennan et al.   RENEWABLE & SUSTAINABLE ENERGY REVIEWS

Microalgae for biodiesel production and other applications: A review

(2009) Teresa M. Mata et al.   RENEWABLE & SUSTAINABLE ENERGY REVIEWS

Transcription factors and regulation of photosynthetic and related metabolism under environmental stresses

(2008) Nelson J. M. Saibo et al.   ANNALS OF BOTANY

Microalgae for oil: Strain selection, induction of lipid synthesis and outdoor mass cultivation in a low-cost photobioreactor

(2008) Liliana Rodolfi et al.   BIOTECHNOLOGY AND BIOENGINEERING

Quantitative mass spectrometry-based techniques for clinical use: Biomarker identification and quantification☆

(2008) Kathryn L. Simpson et al.   JOURNAL OF CHROMATOGRAPHY B-ANALYTICAL TECHNOLOGIES IN THE BIOMEDICAL AND LIFE SCIENCES

Molecular Remodeling of Photosystem II during State Transitions in Chlamydomonas reinhardtii

(2008) M. Iwai et al.   PLANT CELL

Déjà vu in proteomics. A hit parade of repeatedly identified differentially expressed proteins

(2008) Jiri Petrak et al.   PROTEOMICS