Transcriptome analysis of a wild bird reveals physiological responses to the urban environment

Urban environment shortens telomere length in nestling great tits,Parus major

(2016) P. Salmón et al.   Biology Letters

Dual-compartmental transcriptomic + proteomic analysis of a marine endosymbiosis exposed to environmental change

(2016) Anderson B. Mayfield et al.   MOLECULAR ECOLOGY

Resource base influences genome-wide DNA methylation levels in wild baboons (Papio cynocephalus)

(2016) Amanda J. Lea et al.   MOLECULAR ECOLOGY

Evidence from pyrosequencing indicates that natural variation in animal personality is associated with DRD4 DNA methylation

(2016) Eveline C. Verhulst et al.   MOLECULAR ECOLOGY

Evolutionary signals of selection on cognition from the great tit genome and methylome

(2016) Veronika N. Laine et al.   Nature Communications

Differential embryotoxicity of the organic pollutants in rural and urban air particles

(2015) Sofia R. Mesquita et al.   ENVIRONMENTAL POLLUTION

Urbanization, oxidative stress and inflammation: a question of evolving, acclimatizing or coping with urban environmental stress

(2015) Caroline Isaksson   FUNCTIONAL ECOLOGY

The Avian Transcriptome Response to Malaria Infection

(2015) Elin Videvall et al.   MOLECULAR BIOLOGY AND EVOLUTION

Effects of nocturnal illumination on life-history decisions and fitness in two wild songbird species

(2015) M. de Jong et al.   PHILOSOPHICAL TRANSACTIONS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES

HTSeq--a Python framework to work with high-throughput sequencing data

(2014) S. Anders et al.   BIOINFORMATICS

Patterns of DNA Methylation in Animals: An Ecotoxicological Perspective

(2014) J. A. Head   INTEGRATIVE AND COMPARATIVE BIOLOGY

Transcriptome resources for the white-footed mouse (Peromyscus leucopus): new genomic tools for investigating ecologically divergent urban and rural populations

(2014) Stephen E. Harris et al.   Molecular Ecology Resources

Parasites in the City: Degree of Urbanization Predicts Poxvirus and Coccidian Infections in House Finches (Haemorhous mexicanus)

(2014) Mathieu Giraudeau et al.   PLoS One

System wide analyses have underestimated protein abundances and the importance of transcription in mammals

(2014) Jingyi Jessica Li et al.   PeerJ

Traffic noise causes physiological stress and impairs breeding migration behaviour in frogs

(2014) J. B. Tennessen et al.   Conservation Physiology

Signatures of Rapid Evolution in Urban and Rural Transcriptomes of White-Footed Mice (Peromyscus leucopus) in the New York Metropolitan Area

(2013) Stephen E. Harris et al.   PLoS One

TopHat2: accurate alignment of transcriptomes in the presence of insertions, deletions and gene fusions

(2013) Daehwan Kim et al.   GENOME BIOLOGY

Parasite–bird interactions in urban areas: Current evidence and emerging questions

(2012) Carlos A. Delgado-V. et al.   LANDSCAPE AND URBAN PLANNING

Whole Transcriptome Analysis of the CoralAcropora milleporaReveals Complex Responses to CO2-driven Acidification during the Initiation of Calcification

(2012) A. MOYA et al.   MOLECULAR ECOLOGY

Global forecasts of urban expansion to 2030 and direct impacts on biodiversity and carbon pools

(2012) K. C. Seto et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Dietary fatty acid composition influences tissue lipid profiles and regulation of body temperature in Japanese quail

(2011) Miriam Ben-Hamo et al.   JOURNAL OF COMPARATIVE PHYSIOLOGY B-BIOCHEMICAL SYSTEMIC AND ENVIRONMENTAL PHYSIOLOGY

REVIGO Summarizes and Visualizes Long Lists of Gene Ontology Terms

(2011) Fran Supek et al.   PLoS One

Environmentally induced oxidative stress in aquatic animals

(2010) Volodymyr I. Lushchak   AQUATIC TOXICOLOGY

Pollution and Its Impact on Wild Animals: A Meta-Analysis on Oxidative Stress

(2010) Caroline Isaksson   EcoHealth

Metal-related oxidative stress in birds

(2010) Miia J. Koivula et al.   ENVIRONMENTAL POLLUTION

Comparative transcriptomics implicates mechanisms of evolved pollution tolerance in a killifish population

(2010) A. WHITEHEAD et al.   MOLECULAR ECOLOGY

Evolutionary stasis: the stable chromosomes of birds

(2010) Hans Ellegren   TRENDS IN ECOLOGY & EVOLUTION

Rapid DNA Methylation Changes after Exposure to Traffic Particles

(2009) Andrea Baccarelli et al.   AMERICAN JOURNAL OF RESPIRATORY AND CRITICAL CARE MEDICINE

The Sequence Alignment/Map format and SAMtools

(2009) H. Li et al.   BIOINFORMATICS

Street Lighting Disturbs Commuting Bats

(2009) Emma Louise Stone et al.   CURRENT BIOLOGY

Epigenetics and environmental chemicals

(2009) Andrea Baccarelli et al.   CURRENT OPINION IN PEDIATRICS

Epigenetic mechanisms that underpin metabolic and cardiovascular diseases

(2009) Peter D. Gluckman et al.   Nature Reviews Endocrinology

Levels of antioxidants in rural and urban birds and their consequences

(2009) Anders Pape Møller et al.   OECOLOGIA

Successful city dwellers: a comparative study of the ecological characteristics of urban birds in the Western Palearctic

(2009) Anders Pape Møller   OECOLOGIA

Effects of urbanisation on disease prevalence and age structure in blackbirdTurdus merulapopulations

(2009) Karl L. Evans et al.   OIKOS

URBAN LAND USE PREDICTS WEST NILE VIRUS EXPOSURE IN SONGBIRDS

(2008) Catherine A. Bradley et al.   ECOLOGICAL APPLICATIONS

Transcriptome Analysis in Peripheral Blood of Humans Exposed to Environmental Carcinogens: A Promising New Biomarker in Environmental Health Studies

(2008) Danitsja M. van Leeuwen et al.   ENVIRONMENTAL HEALTH PERSPECTIVES

Lean birds in the city: body size and condition of house sparrows along the urbanization gradient

(2008) A. Liker et al.   JOURNAL OF ANIMAL ECOLOGY

Transcriptomic variation and plasticity in rufous-collared sparrows (Zonotrichia capensis) along an altitudinal gradient

(2008) ZACHARY A. CHEVIRON et al.   MOLECULAR ECOLOGY

Rapid evolution of seed dispersal in an urban environment in the weed Crepis sancta

(2008) P.-O. Cheptou et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Metallothioneins (MTs) and δ-aminolevulinic acid dehydratase (ALAd) as biomarkers of metal pollution in great tits (Parus major) along a pollution gradient

(2008) Caroline Vanparys et al.   SCIENCE OF THE TOTAL ENVIRONMENT