The Avian Transcriptome Response to Malaria Infection

HTSeq--a Python framework to work with high-throughput sequencing data

(2014) S. Anders et al.   BIOINFORMATICS

TopHat2: accurate alignment of transcriptomes in the presence of insertions, deletions and gene fusions

(2013) Daehwan Kim et al.   GENOME BIOLOGY

Explaining variance of avian malaria infection in the wild: the importance of host density, habitat, individual life-history and oxidative stress

(2013) Caroline Isaksson et al.   BMC ECOLOGY

Translocation of Sickle Cell Erythrocyte MicroRNAs into Plasmodium falciparum Inhibits Parasite Translation and Contributes to Malaria Resistance

(2012) Gregory LaMonte et al.   Cell Host & Microbe

Fast gapped-read alignment with Bowtie 2

(2012) Ben Langmead et al.   NATURE METHODS

Dual RNA-seq of pathogen and host

(2012) Alexander J. Westermann et al.   NATURE REVIEWS MICROBIOLOGY

Ensembl 2013

(2012) Paul Flicek et al.   NUCLEIC ACIDS RESEARCH

Role of Oxidative Stress and Apoptosis in the Placental Pathology of Plasmodium berghei Infected Mice

(2012) Lalita Sharma et al.   PLoS One

Evidence for additive and interaction effects of host genotype and infection in malaria

(2012) Y. Idaghdour et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

The mammalian microRNA response to bacterial infections

(2012) Ana Eulalio et al.   RNA Biology

Cell death and infection: A double-edged sword for host and pathogen survival

(2011) Hiroshi Ashida et al.   JOURNAL OF CELL BIOLOGY

Global host metabolic response to Plasmodium vivax infection: a 1H NMR based urinary metabonomic study

(2011) Arjun Sengupta et al.   MALARIA JOURNAL

Apicomplexan parasites and subversion of the host cell microRNA pathway

(2011) Mohamed-ali Hakimi et al.   TRENDS IN PARASITOLOGY

From RNA-seq reads to differential expression results

(2011) Alicia Oshlack et al.   GENOME BIOLOGY

Manipulation of Host Cell Death Pathways during Microbial Infections

(2010) Mohamed Lamkanfi et al.   Cell Host & Microbe

Plasmodium relictum (lineage SGS1) and Plasmodium ashfordi (lineage GRW2): The effects of the co-infection on experimentally infected passerine birds

(2010) Vaidas Palinauskas et al.   EXPERIMENTAL PARASITOLOGY

Effect of repeated exposure to Plasmodium relictum (lineage SGS1) on infection dynamics in domestic canaries

(2010) Elise Cellier-Holzem et al.   INTERNATIONAL JOURNAL FOR PARASITOLOGY

The genome of a songbird

(2010) Wesley C. Warren et al.   NATURE

History of the discovery of the malaria parasites and their vectors

(2010) Francis EG Cox   Parasites & Vectors

Evolutionary stasis: the stable chromosomes of birds

(2010) Hans Ellegren   TRENDS IN ECOLOGY & EVOLUTION

Differential expression analysis for sequence count data

(2010) Simon Anders et al.   GENOME BIOLOGY

MicroRNAs: Novel regulators of immunity

(2009) Claudia Carissimi et al.   AUTOIMMUNITY REVIEWS

The Sequence Alignment/Map format and SAMtools

(2009) H. Li et al.   BIOINFORMATICS

edgeR: a Bioconductor package for differential expression analysis of digital gene expression data

(2009) M. D. Robinson et al.   BIOINFORMATICS

Host cell transcriptional profiling during malaria liver stage infection reveals a coordinated and sequential set of biological events

(2009) Sónia S Albuquerque et al.   BMC GENOMICS

MicroRNA Control in the Immune System: Basic Principles

(2009) Changchun Xiao et al.   CELL

A jack-of-all-trades and still a master of some: prevalence and host range in avian malaria and related blood parasites

(2009) Olof Hellgren et al.   ECOLOGY

Introduced Avian Diseases, Climate Change, and the Future of Hawaiian Honeycreepers

(2009) Carter T. Atkinson et al.   JOURNAL OF AVIAN MEDICINE AND SURGERY

A Comparative Analysis of Microscopy and PCR-Based Detection Methods for Blood Parasites

(2009) Gediminas Valkiūnas et al.   JOURNAL OF PARASITOLOGY

MalAvi: a public database of malaria parasites and related haemosporidians in avian hosts based on mitochondrial cytochromeblineages

(2009) STAFFAN BENSCH et al.   Molecular Ecology Resources

The murine cerebral malaria phenomenon

(2009) Nicholas J. White et al.   TRENDS IN PARASITOLOGY

Plasmodium relictum (lineage P-SGS1): Effects on experimentally infected passerine birds

(2008) Vaidas Palinauskas et al.   EXPERIMENTAL PARASITOLOGY

Initial transference of wild birds to captivity alters stress physiology

(2008) Molly J. Dickens et al.   GENERAL AND COMPARATIVE ENDOCRINOLOGY

Global Metabolic Responses of NMRI Mice to an ExperimentalPlasmodium bergheiInfection

(2008) Jia V. Li et al.   JOURNAL OF PROTEOME RESEARCH

RNA-Seq: a revolutionary tool for transcriptomics

(2008) Zhong Wang et al.   NATURE REVIEWS GENETICS

Inflammation and oxidative stress in vertebrate host-parasite systems

(2008) G. Sorci et al.   PHILOSOPHICAL TRANSACTIONS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES

Decomposing health: tolerance and resistance to parasites in animals

(2008) L. Raberg et al.   PHILOSOPHICAL TRANSACTIONS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES

microRNAs and the immune response

(2008) Mark A. Lindsay   TRENDS IN IMMUNOLOGY