Dual-compartmental transcriptomic + proteomic analysis of a marine endosymbiosis exposed to environmental change

A Compartmental Comparison of Major Lipid Species in a Coral-Symbiodinium Endosymbiosis: Evidence that the Coral Host Regulates Lipogenesis of Its Cytosolic Lipid Bodies

(2015) Hung-Kai Chen et al.   PLoS One

The Symbiodinium kawagutii genome illuminates dinoflagellate gene expression and coral symbiosis

(2015) S. Lin et al.   SCIENCE

Rubisco Expression in the Dinoflagellate Symbiodinium sp. Is Influenced by Both Photoperiod and Endosymbiotic Lifestyle

(2014) Anderson B. Mayfield et al.   MARINE BIOTECHNOLOGY

Compartment-specific transcriptomics in a reef-building coral exposed to elevated temperatures

(2014) Anderson B. Mayfield et al.   MOLECULAR ECOLOGY

Mechanisms of reef coral resistance to future climate change

(2014) S. R. Palumbi et al.   SCIENCE

MS-GF+ makes progress towards a universal database search tool for proteomics

(2014) Sangtae Kim et al.   Nature Communications

Physiological acclimation to elevated temperature in a reef-building coral from an upwelling environment

(2013) A. B. Mayfield et al.   CORAL REEFS

The physiological response of the reef coral Pocillopora damicornis to elevated temperature: results from coral reef mesocosm experiments in Southern Taiwan

(2013) Anderson B. Mayfield et al.   MARINE ENVIRONMENTAL RESEARCH

Analysis of the Human Tissue-specific Expression by Genome-wide Integration of Transcriptomics and Antibody-based Proteomics

(2013) Linn Fagerberg et al.   MOLECULAR & CELLULAR PROTEOMICS

Genomic basis for coral resilience to climate change

(2013) Daniel J. Barshis et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

The effects of a variable temperature regime on the physiology of the reef-building coral Seriatopora hystrix: results from a laboratory-based reciprocal transplant

(2012) A. B. Mayfield et al.   JOURNAL OF EXPERIMENTAL BIOLOGY

The physiological and molecular responses of larvae from the reef-building coral Pocillopora damicornis exposed to near-future increases in temperature and pCO2

(2012) H. M. Putnam et al.   MARINE BIOLOGY

RSEM: accurate transcript quantification from RNA-Seq data with or without a reference genome

(2011) Bo Li et al.   BMC BIOINFORMATICS

Diel rhythmicity of lipid-body formation in a coral-Symbiodinium endosymbiosis

(2011) W.-N. U. Chen et al.   CORAL REEFS

Using the Acropora digitifera genome to understand coral responses to environmental change

(2011) Chuya Shinzato et al.   NATURE

Full-length transcriptome assembly from RNA-Seq data without a reference genome

(2011) Manfred G Grabherr et al.   NATURE BIOTECHNOLOGY

Assessing the Impacts of Experimentally Elevated Temperature on the Biological Composition and Molecular Chaperone Gene Expression of a Reef Coral

(2011) Anderson B. Mayfield et al.   PLoS One

Lipid bodies in coral-dinoflagellate endosymbiosis: Proteomic and ultrastructural studies

(2011) Shao-En Peng et al.   PROTEOMICS

SolexaQA: At-a-glance quality assessment of Illumina second-generation sequencing data

(2010) Murray P Cox et al.   BMC BIOINFORMATICS

Evaluating the temporal stability of stress-activated protein kinase and cytoskeleton gene expression in the Pacific reef corals Pocillopora damicornis and Seriatopora hystrix

(2010) Anderson B. Mayfield et al.   JOURNAL OF EXPERIMENTAL MARINE BIOLOGY AND ECOLOGY

Nutrient enrichment caused by marine cage culture and its influence on subtropical coral communities in turbid waters

(2010) YCA Huang et al.   MARINE ECOLOGY PROGRESS SERIES