ATAC-seq on biobanked specimens defines a unique chromatin accessibility structure in naïve SLE B cells
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Title
ATAC-seq on biobanked specimens defines a unique chromatin accessibility structure in naïve SLE B cells
Authors
Keywords
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Journal
Scientific Reports
Volume 6, Issue 1, Pages -
Publisher
Springer Nature
Online
2016-06-02
DOI
10.1038/srep27030
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- (2015) Christopher M Tipton et al. NATURE IMMUNOLOGY
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- (2014) S. N. Kariuki et al. JOURNAL OF IMMUNOLOGY
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- (2014) Kyle Kai-How Farh et al. NATURE
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- (2014) D. Lara-Astiaso et al. SCIENCE
- Master Transcription Factors and Mediator Establish Super-Enhancers at Key Cell Identity Genes
- (2013) Warren A. Whyte et al. CELL
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- (2013) Mikhail G Dozmorov et al. Epigenetics
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- (2013) John C. Cambier JOURNAL OF CLINICAL INVESTIGATION
- Transposition of native chromatin for fast and sensitive epigenomic profiling of open chromatin, DNA-binding proteins and nucleosome position
- (2013) Jason D Buenrostro et al. NATURE METHODS
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- (2013) Devin M. Absher et al. PLoS Genetics
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- (2012) S. G. Landt et al. GENOME RESEARCH
- Sequence features and chromatin structure around the genomic regions bound by 119 human transcription factors
- (2012) J. Wang et al. GENOME RESEARCH
- Genetic susceptibility to lupus: the biological basis of genetic risk found in B cell signaling pathways
- (2012) Samuel E. Vaughn et al. JOURNAL OF LEUKOCYTE BIOLOGY
- Architecture of the human regulatory network derived from ENCODE data
- (2012) Mark B. Gerstein et al. NATURE
- Factorbook.org: a Wiki-based database for transcription factor-binding data generated by the ENCODE consortium
- (2012) J. Wang et al. NUCLEIC ACIDS RESEARCH
- Controls of Nucleosome Positioning in the Human Genome
- (2012) Daniel J. Gaffney et al. PLoS Genetics
- A statistical framework for SNP calling, mutation discovery, association mapping and population genetical parameter estimation from sequencing data
- (2011) H. Li BIOINFORMATICS
- FIMO: scanning for occurrences of a given motif
- (2011) Charles E. Grant et al. BIOINFORMATICS
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- (2010) Thomas Dörner et al. JOURNAL OF IMMUNOLOGICAL METHODS
- Autoimmune Kidney Disease and Impaired Engulfment of Apoptotic Cells in Mice with Macrophage Peroxisome Proliferator-Activated Receptor or Retinoid X Receptor Deficiency
- (2010) T. Roszer et al. JOURNAL OF IMMUNOLOGY
- Simple Combinations of Lineage-Determining Transcription Factors Prime cis-Regulatory Elements Required for Macrophage and B Cell Identities
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- The Sequence Alignment/Map format and SAMtools
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- edgeR: a Bioconductor package for differential expression analysis of digital gene expression data
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