- Home
- Publications
- Publication Search
- Publication Details
Title
Controls of Nucleosome Positioning in the Human Genome
Authors
Keywords
-
Journal
PLoS Genetics
Volume 8, Issue 11, Pages e1003036
Publisher
Public Library of Science (PLoS)
Online
2012-11-16
DOI
10.1371/journal.pgen.1003036
References
Ask authors/readers for more resources
Related references
Note: Only part of the references are listed.- Ubiquitous heterogeneity and asymmetry of the chromatin environment at regulatory elements
- (2012) A. Kundaje et al. GENOME RESEARCH
- Micrococcal Nuclease Does Not Substantially Bias Nucleosome Mapping
- (2012) James Allan et al. JOURNAL OF MOLECULAR BIOLOGY
- DNase I sensitivity QTLs are a major determinant of human expression variation
- (2012) Jacob F. Degner et al. NATURE
- False positive peaks in ChIP-seq and other sequencing-based functional assays caused by unannotated high copy number regions
- (2011) Joseph K. Pickrell et al. BIOINFORMATICS
- Determinants of nucleosome organization in primary human cells
- (2011) Anton Valouev et al. NATURE
- Mapping and analysis of chromatin state dynamics in nine human cell types
- (2011) Jason Ernst et al. NATURE
- Chromatin accessibility pre-determines glucocorticoid receptor binding patterns
- (2011) Sam John et al. NATURE GENETICS
- A Role for Snf2-Related Nucleosome-Spacing Enzymes in Genome-Wide Nucleosome Organization
- (2011) T. Gkikopoulos et al. SCIENCE
- A Packing Mechanism for Nucleosome Organization Reconstituted Across a Eukaryotic Genome
- (2011) Z. Zhang et al. SCIENCE
- A User's Guide to the Encyclopedia of DNA Elements (ENCODE)
- (2011) PLOS BIOLOGY
- Quantitative Models of the Mechanisms That Control Genome-Wide Patterns of Transcription Factor Binding during Early Drosophila Development
- (2011) Tommy Kaplan et al. PLoS Genetics
- ArchAlign: Coordinate-free chromatin alignment reveals novel architectures
- (2011) William Lai et al. GENOME BIOLOGY
- Accurate inference of transcription factor binding from DNA sequence and chromatin accessibility data
- (2010) R. Pique-Regi et al. GENOME RESEARCH
- A map of human genome variation from population-scale sequencing
- (2010) Richard M. Durbin et al. NATURE
- Nucleosome sequence preferences influence in vivo nucleosome organization
- (2010) Noam Kaplan et al. NATURE STRUCTURAL & MOLECULAR BIOLOGY
- High Nucleosome Occupancy Is Encoded at Human Regulatory Sequences
- (2010) Desiree Tillo et al. PLoS One
- The Effect of Micrococcal Nuclease Digestion on Nucleosome Positioning Data
- (2010) Ho-Ryun Chung et al. PLoS One
- Contribution of histone sequence preferences to nucleosome organization: proposed definitions and methodology
- (2010) Noam Kaplan et al. GENOME BIOLOGY
- The Sequence Alignment/Map format and SAMtools
- (2009) H. Li et al. BIOINFORMATICS
- Fast and accurate short read alignment with Burrows-Wheeler transform
- (2009) H. Li et al. BIOINFORMATICS
- G+C content dominates intrinsic nucleosome occupancy
- (2009) Desiree Tillo et al. BMC BIOINFORMATICS
- An ensemble model of competitive multi-factor binding of the genome
- (2009) T. Wasson et al. GENOME RESEARCH
- The logic of chromatin architecture and remodelling at promoters
- (2009) Bradley R. Cairns NATURE
- Intrinsic histone-DNA interactions are not the major determinant of nucleosome positions in vivo
- (2009) Yong Zhang et al. NATURE STRUCTURAL & MOLECULAR BIOLOGY
- Dynamic Regulation of Nucleosome Positioning in the Human Genome
- (2008) Dustin E. Schones et al. CELL
- High-Resolution Mapping and Characterization of Open Chromatin across the Genome
- (2008) Alan P. Boyle et al. CELL
- A high-resolution, nucleosome position map of C. elegans reveals a lack of universal sequence-dictated positioning
- (2008) A. Valouev et al. GENOME RESEARCH
- A barrier nucleosome model for statistical positioning of nucleosomes throughout the yeast genome
- (2008) T. N. Mavrich et al. GENOME RESEARCH
- Nucleosome organization in the Drosophila genome
- (2008) Travis N. Mavrich et al. NATURE
- The DNA-encoded nucleosome organization of a eukaryotic genome
- (2008) Noam Kaplan et al. NATURE
- Chromatin-Associated Periodicity in Genetic Variation Downstream of Transcriptional Start Sites
- (2008) S. Sasaki et al. SCIENCE
- Distinct Modes of Regulation by Chromatin Encoded through Nucleosome Positioning Signals
- (2008) Yair Field et al. PLoS Computational Biology
- The Insulator Binding Protein CTCF Positions 20 Nucleosomes around Its Binding Sites across the Human Genome
- (2008) Yutao Fu et al. PLoS Genetics
- Practical Issues in Imputation-Based Association Mapping
- (2008) Yongtao Guan et al. PLoS Genetics
- Model-based Analysis of ChIP-Seq (MACS)
- (2008) Yong Zhang et al. GENOME BIOLOGY
Become a Peeref-certified reviewer
The Peeref Institute provides free reviewer training that teaches the core competencies of the academic peer review process.
Get StartedAsk a Question. Answer a Question.
Quickly pose questions to the entire community. Debate answers and get clarity on the most important issues facing researchers.
Get Started