Degenerate PCR Primers to Reveal the Diversity of Giant Viruses in Coastal Waters

Locality and diel cycling of viral production revealed by a 24 h time course cross-omics analysis in a coastal region of Japan

(2018) Takashi Yoshida et al.   ISME Journal

Taxon Richness of “Megaviridae” Exceeds those of Bacteria and Archaea in the Ocean

(2018) Tomoko Mihara et al.   MICROBES AND ENVIRONMENTS

A global ocean atlas of eukaryotic genes

(2018) Quentin Carradec et al.   Nature Communications

The kinetoplastid-infecting Bodo saltans virus (BsV), a window into the most abundant giant viruses in the sea

(2018) Christoph M Deeg et al.   eLife

Comparative Genomics of Chrysochromulina Ericina Virus and Other Microalga-Infecting Large DNA Viruses Highlights Their Intricate Evolutionary Relationship with the Established Mimiviridae Family

(2017) Lucie Gallot-Lavallée et al.   JOURNAL OF VIROLOGY

Giant viruses with an expanded complement of translation system components

(2017) Frederik Schulz et al.   SCIENCE

Seasonal Dynamics of Haptophytes and dsDNA Algal Viruses Suggest Complex Virus-Host Relationship

(2017) Torill Johannessen et al.   Viruses-Basel

Environmental Viral Genomes Shed New Light on Virus-Host Interactions in the Ocean

(2017) Yosuke Nishimura et al.   mSphere

Application of the MAFFT sequence alignment program to large data—reexamination of the usefulness of chained guide trees

(2016) Kazunori D. Yamada et al.   BIOINFORMATICS

ETE 3: Reconstruction, Analysis, and Visualization of Phylogenomic Data

(2016) Jaime Huerta-Cepas et al.   MOLECULAR BIOLOGY AND EVOLUTION

Plankton networks driving carbon export in the oligotrophic ocean

(2016) Lionel Guidi et al.   NATURE

Ecogenomics and potential biogeochemical impacts of globally abundant ocean viruses

(2016) Simon Roux et al.   NATURE

Re-examination of the relationship between marine virus and microbial cell abundances

(2016) Charles H. Wigington et al.   Nature Microbiology

Eukaryotic plankton diversity in the sunlit ocean

(2015) C. de Vargas et al.   SCIENCE

Structure and function of the global ocean microbiome

(2015) S. Sunagawa et al.   SCIENCE

Biogeography of Viruses in the Sea

(2015) Cheryl-Emiliane T. Chow et al.   Annual Review of Virology

Unveiling of the Diversity of Prasinoviruses (Phycodnaviridae) in Marine Samples by Using High-Throughput Sequencing Analyses of PCR-Amplified DNA Polymerase and Major Capsid Protein Genes

(2014) Camille Clerissi et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Trimmomatic: a flexible trimmer for Illumina sequence data

(2014) Anthony M. Bolger et al.   BIOINFORMATICS

Prasinovirus distribution in the Northwest Mediterranean Sea is affected by the environment and particularly by phosphate availability

(2014) Camille Clerissi et al.   VIROLOGY

Editorial introduction to “Giant Viruses” special issue of Virology

(2014) Matthias G. Fischer et al.   VIROLOGY

Genome of brown tide virus (AaV), the little giant of the Megaviridae, elucidates NCLDV genome expansion and host–virus coevolution

(2014) Mohammad Moniruzzaman et al.   VIROLOGY

Development of DNA mismatch repair gene, MutS, as a diagnostic marker for detection and phylogenetic analysis of algal Megaviruses

(2014) William H. Wilson et al.   VIROLOGY

“Megavirales”, a proposed new order for eukaryotic nucleocytoplasmic large DNA viruses

(2013) Philippe Colson et al.   ARCHIVES OF VIROLOGY

Exploring nucleo-cytoplasmic large DNA viruses in Tara Oceans microbial metagenomes

(2013) Pascal Hingamp et al.   ISME Journal

Genome of Phaeocystis globosa virus PgV-16T highlights the common ancestry of the largest known DNA viruses infecting eukaryotes

(2013) S. Santini et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Diurnal Infection Patterns and Impact of Microcystis Cyanophages in a Japanese Pond

(2012) Shigeko Kimura et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

CD-HIT: accelerated for clustering the next-generation sequencing data

(2012) Limin Fu et al.   BIOINFORMATICS

Fast gapped-read alignment with Bowtie 2

(2012) Ben Langmead et al.   NATURE METHODS

Primer3—new capabilities and interfaces

(2012) Andreas Untergasser et al.   NUCLEIC ACIDS RESEARCH

UCHIME improves sensitivity and speed of chimera detection

(2011) Robert C. Edgar et al.   BIOINFORMATICS

FLASH: fast length adjustment of short reads to improve genome assemblies

(2011) T. Magoc et al.   BIOINFORMATICS

Distant Mimivirus relative with a larger genome highlights the fundamental features of Megaviridae

(2011) D. Arslan et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Another Really, Really Big Virus

(2011) James L. Van Etten   Viruses-Basel

pplacer: linear time maximum-likelihood and Bayesian phylogenetic placement of sequences onto a fixed reference tree

(2010) Frederick A Matsen et al.   BMC BIOINFORMATICS

Tentative Characterization of New Environmental Giant Viruses by MALDI-TOF Mass Spectrometry

(2010) Bernard La Scola et al.   INTERVIROLOGY

QIIME allows analysis of high-throughput community sequencing data

(2010) J Gregory Caporaso et al.   NATURE METHODS

Giant virus with a remarkable complement of genes infects marine zooplankton

(2010) M. G. Fischer et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Biopython: freely available Python tools for computational molecular biology and bioinformatics

(2009) P. J. A. Cock et al.   BIOINFORMATICS

Roles of viruses in the environment

(2009) Forest Rohwer et al.   ENVIRONMENTAL MICROBIOLOGY

Phylogenetic Analysis of Members of the Phycodnaviridae Virus Family, Using Amplified Fragments of the Major Capsid Protein Gene

(2008) J. B. Larsen et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Marine mimivirus relatives are probably large algal viruses

(2008) Adam Monier et al.   Virology Journal