Exploring nucleo-cytoplasmic large DNA viruses in Tara Oceans microbial metagenomes

Reclassification of Giant Viruses Composing a Fourth Domain of Life in the New Order Megavirales

(2012) Philippe Colson et al.   INTERVIROLOGY

Hidden evolutionary complexity of Nucleo-Cytoplasmic Large DNA viruses of eukaryotes

(2012) Natalya Yutin et al.   Virology Journal

Megalocytiviruses

(2012) Jun Kurita et al.   Viruses-Basel

Microbial Co-occurrence Relationships in the Human Microbiome

(2012) Karoline Faust et al.   PLoS Computational Biology

Marine Viruses: Truth or Dare

(2011) Mya Breitbart   Annual Review of Marine Science

Entry of oomycete and fungal effectors into plant and animal host cells

(2011) Shiv D. Kale et al.   CELLULAR MICROBIOLOGY

Genomic content of uncultured Bacteroidetes from contrasting oceanic provinces in the North Atlantic Ocean

(2011) Paola R. Gómez-Pereira et al.   ENVIRONMENTAL MICROBIOLOGY

Lausannevirus, a giant amoebal virus encoding histone doublets

(2011) Vincent Thomas et al.   ENVIRONMENTAL MICROBIOLOGY

Microbial metatranscriptomics in a permanent marine oxygen minimum zone

(2011) Frank J. Stewart et al.   ENVIRONMENTAL MICROBIOLOGY

Unveiling the transcriptional features associated with coccolithovirus infection of natural Emiliania huxleyi blooms

(2011) António Pagarete et al.   FEMS MICROBIOLOGY ECOLOGY

Marine bacterial, archaeal and protistan association networks reveal ecological linkages

(2011) Joshua A Steele et al.   ISME Journal

Two new subfamilies of DNA mismatch repair proteins (MutS) specifically abundant in the marine environment

(2011) Hiroyuki Ogata et al.   ISME Journal

MEGA5: Molecular Evolutionary Genetics Analysis Using Maximum Likelihood, Evolutionary Distance, and Maximum Parsimony Methods

(2011) K. Tamura et al.   MOLECULAR BIOLOGY AND EVOLUTION

Reorganizing the protein space at the Universal Protein Resource (UniProt)

(2011)   NUCLEIC ACIDS RESEARCH

GenBank

(2011) D. A. Benson et al.   NUCLEIC ACIDS RESEARCH

NCBI Reference Sequences (RefSeq): current status, new features and genome annotation policy

(2011) K. D. Pruitt et al.   NUCLEIC ACIDS RESEARCH

Single Virus Genomics: A New Tool for Virus Discovery

(2011) Lisa Zeigler Allen et al.   PLoS One

A Molecular Insight into Algal-Oomycete Warfare: cDNA Analysis of Ectocarpus siliculosus Infected with the Basal Oomycete Eurychasma dicksonii

(2011) Laura Grenville-Briggs et al.   PLoS One

Horizontal gene transfer facilitated the evolution of plant parasitic mechanisms in the oomycetes

(2011) T. A. Richards et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Virophage control of antarctic algal host-virus dynamics

(2011) S. Yau et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Distant Mimivirus relative with a larger genome highlights the fundamental features of Megaviridae

(2011) D. Arslan et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Single-Cell Genomics Reveals Organismal Interactions in Uncultivated Marine Protists

(2011) H. S. Yoon et al.   SCIENCE

Another Really, Really Big Virus

(2011) James L. Van Etten   Viruses-Basel

Raw Sewage Harbors Diverse Viral Populations

(2011) P. G. Cantalupo et al.   mBio

A Holistic Approach to Marine Eco-Systems Biology

(2011) Eric Karsenti et al.   PLOS BIOLOGY

Eukaryotic Picoplankton in Surface Oceans

(2010) Ramon Massana   Annual Review of Microbiology

pplacer: linear time maximum-likelihood and Bayesian phylogenetic placement of sequences onto a fixed reference tree

(2010) Frederick A Matsen et al.   BMC BIOINFORMATICS

BLAST-EXPLORER helps you building datasets for phylogenetic analysis

(2010) Alexis Dereeper et al.   BMC EVOLUTIONARY BIOLOGY

A global network of coexisting microbes from environmental and whole-genome sequence data

(2010) S. Chaffron et al.   GENOME RESEARCH

Gene Exchange and the Origin of Giant Viruses

(2010) Jonathan Filée et al.   INTERVIROLOGY

Giant Viruses: Conflicts in Revisiting the Virus Concept

(2010) Patrick Forterre   INTERVIROLOGY

Tentative Characterization of New Environmental Giant Viruses by MALDI-TOF Mass Spectrometry

(2010) Bernard La Scola et al.   INTERVIROLOGY

Viral and microbial community dynamics in four aquatic environments

(2010) Beltran Rodriguez-Brito et al.   ISME Journal

Marine Prasinovirus Genomes Show Low Evolutionary Divergence and Acquisition of Protein Metabolism Genes by Horizontal Gene Transfer

(2010) H. Moreau et al.   JOURNAL OF VIROLOGY

Trade-Offs between Competition and Defense Specialists among Unicellular Planktonic Organisms: the "Killing the Winner" Hypothesis Revisited

(2010) C. Winter et al.   MICROBIOLOGY AND MOLECULAR BIOLOGY REVIEWS

FragGeneScan: predicting genes in short and error-prone reads

(2010) Mina Rho et al.   NUCLEIC ACIDS RESEARCH

Community cyberinfrastructure for Advanced Microbial Ecology Research and Analysis: the CAMERA resource

(2010) S. Sun et al.   NUCLEIC ACIDS RESEARCH

Giant virus with a remarkable complement of genes infects marine zooplankton

(2010) M. G. Fischer et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Signatures of Adaptation to Obligate Biotrophy in the Hyaloperonospora arabidopsidis Genome

(2010) L. Baxter et al.   SCIENCE

A Cryptic Sulfur Cycle in Oxygen-Minimum-Zone Waters off the Chilean Coast

(2010) D. E. Canfield et al.   SCIENCE

Abundance, spatial distribution and genetic diversity ofOstreococcus tauriviruses in two different environments

(2010) Laure Bellec et al.   Environmental Microbiology Reports

Genome sequence of the necrotrophic plant pathogen Pythium ultimum reveals original pathogenicity mechanisms and effector repertoire

(2010) C André Lévesque et al.   GENOME BIOLOGY

phyloXML: XML for evolutionary biology and comparative genomics

(2009) Mira V Han et al.   BMC BIOINFORMATICS

Horizontal gene transfer of an entire metabolic pathway between a eukaryotic alga and its DNA virus

(2009) A. Monier et al.   GENOME RESEARCH

Systematic artifacts in metagenomes from complex microbial communities

(2009) Vicente Gomez-Alvarez et al.   ISME Journal

Genome sequence and analysis of the Irish potato famine pathogen Phytophthora infestans

(2009) Brian J. Haas et al.   NATURE

Giant Marseillevirus highlights the role of amoebae as a melting pot in emergence of chimeric microorganisms

(2009) M. Boyer et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

High Diversity of the Viral Community from an Antarctic Lake

(2009) A. Lopez-Bueno et al.   SCIENCE

Remarkable sequence similarity between the dinoflagellate-infecting marine girus and the terrestrial pathogen African swine fever virus

(2009) Hiroyuki Ogata et al.   Virology Journal

Eukaryotic large nucleo-cytoplasmic DNA viruses: Clusters of orthologous genes and reconstruction of viral genome evolution

(2009) Natalya Yutin et al.   Virology Journal

fdrtool: a versatile R package for estimating local and tail area-based false discovery rates

(2008) K. Strimmer   BIOINFORMATICS

Giant viruses, giant chimeras: The multiple evolutionary histories of Mimivirus genes

(2008) David Moreira et al.   BMC EVOLUTIONARY BIOLOGY

Dinoflagellates, diatoms, and their viruses

(2008) Keizo Nagasaki   JOURNAL OF MICROBIOLOGY

Redefining viruses: lessons from Mimivirus

(2008) Didier Raoult et al.   NATURE REVIEWS MICROBIOLOGY

Phylogeny.fr: robust phylogenetic analysis for the non-specialist

(2008) A. Dereeper et al.   NUCLEIC ACIDS RESEARCH

Transcriptome of Aphanomyces euteiches: New Oomycete Putative Pathogenicity Factors and Metabolic Pathways

(2008) Elodie Gaulin et al.   PLoS One

The Sorcerer II Global Ocean Sampling Expedition: Metagenomic Characterization of Viruses within Aquatic Microbial Samples

(2008) Shannon J. Williamson et al.   PLoS One

Life-Cycle and Genome of OtV5, a Large DNA Virus of the Pelagic Marine Unicellular Green Alga Ostreococcus tauri

(2008) Evelyne Derelle et al.   PLoS One

The "Cheshire Cat" escape strategy of the coccolithophore Emiliania huxleyi in response to viral infection

(2008) M. Frada et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Marine mimivirus relatives are probably large algal viruses

(2008) Adam Monier et al.   Virology Journal

A Probabilistic Model of Local Sequence Alignment That Simplifies Statistical Significance Estimation

(2008) Sean R. Eddy   PLoS Computational Biology

Taxonomic distribution of large DNA viruses in the sea

(2008) Adam Monier et al.   GENOME BIOLOGY