Metabolic Evolution of a Deep-Branching Hyperthermophilic Chemoautotrophic Bacterium

The Canonical Network of Autotrophic Intermediary Metabolism: Minimal Metabolome of a Reductive Chemoautotroph

(2016) Vijayasarathy Srinivasan et al.   BIOLOGICAL BULLETIN

A large-scale evaluation of computational protein function prediction

(2013) Predrag Radivojac et al.   NATURE METHODS

Horizontal gene transfer and the evolution of bacterial and archaeal population structure

(2013) Martin F. Polz et al.   TRENDS IN GENETICS

Thermodynamic constraints shape the structure of carbon fixation pathways

(2012) Arren Bar-Even et al.   BIOCHIMICA ET BIOPHYSICA ACTA-BIOENERGETICS

Out of fuzzy chemistry: from prebiotic chemistry to metabolic networks

(2012) Juli Peretó   CHEMICAL SOCIETY REVIEWS

Chemoautotrophy at Deep-Sea Vents: Past, Present, and Future

(2012) Stefan Sievert et al.   OCEANOGRAPHY

The compositional and evolutionary logic of metabolism

(2012) Rogier Braakman et al.   PHYSICAL BIOLOGY

Network Context and Selection in the Evolution to Enzyme Specificity

(2012) H. Nam et al.   SCIENCE

The Emergence and Early Evolution of Biological Carbon-Fixation

(2012) Rogier Braakman et al.   PLoS Computational Biology

Role of Chemistry versus Substrate Binding in Recruiting Promiscuous Enzyme Functions

(2011) Olga Khersonsky et al.   BIOCHEMISTRY

The Moderately Efficient Enzyme: Evolutionary and Physicochemical Trends Shaping Enzyme Parameters

(2011) Arren Bar-Even et al.   BIOCHEMISTRY

Kinetic Challenges Facing Oxalate, Malonate, Acetoacetate, and Oxaloacetate Decarboxylases

(2011) Richard Wolfenden et al.   JOURNAL OF THE AMERICAN CHEMICAL SOCIETY

A novel amidotransferase required for lipoic acid cofactor assembly in Bacillus subtilis

(2011) Quin H. Christensen et al.   MOLECULAR MICROBIOLOGY

A novel two-gene requirement for the octanoyltransfer reaction of Bacillus subtilis lipoic acid biosynthesis

(2011) Natalia Martin et al.   MOLECULAR MICROBIOLOGY

Questioning the functional relevance of mitochondrial supercomplexes by time-resolved analysis of the respiratory chain

(2011) M. Trouillard et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Enzyme Promiscuity: A Mechanistic and Evolutionary Perspective

(2010) Olga Khersonsky and Dan S. Tawfik   Annual Review of Biochemistry

Beyond the Calvin Cycle: Autotrophic Carbon Fixation in the Ocean

(2010) Michael Hügler et al.   Annual Review of Marine Science

Alternative Pathways of Carbon Dioxide Fixation: Insights into the Early Evolution of Life?

(2010) Georg Fuchs   Annual Review of Microbiology

Lipoic Acid Synthesis: A New Family of Octanoyltransferases Generally Annotated as Lipoate Protein Ligases

(2010) Quin H. Christensen et al.   BIOCHEMISTRY

Characterization of a new periplasmic single-domain rhodanese encoded by a sulfur-regulated gene in a hyperthermophilic bacterium Aquifex aeolicus

(2010) Marie-Cécile Giuliani et al.   BIOCHIMIE

Thiosulfate Oxidation by a Thermo-Neutrophilic Hydrogen-Oxidizing Bacterium,Hydrogenobacter thermophilus

(2010) Ryoko SANO et al.   BIOSCIENCE BIOTECHNOLOGY AND BIOCHEMISTRY

Aquifex aeolicus membrane hydrogenase for hydrogen biooxidation: Role of lipids and physiological partners in enzyme stability and activity

(2010) Pascale Infossi et al.   INTERNATIONAL JOURNAL OF HYDROGEN ENERGY

Carbon Flow of Heliobacteria Is Related More toClostridiathan to the Green Sulfur Bacteria

(2010) Kuo-Hsiang Tang et al.   JOURNAL OF BIOLOGICAL CHEMISTRY

Metabolic Flux Analysis of the Mixotrophic Metabolisms in the Green Sulfur BacteriumChlorobaculum tepidum

(2010) Xueyang Feng et al.   JOURNAL OF BIOLOGICAL CHEMISTRY

New Functional Sulfide Oxidase-Oxygen Reductase Supercomplex in the Membrane of the Hyperthermophilic BacteriumAquifex aeolicus

(2010) Laurence Prunetti et al.   JOURNAL OF BIOLOGICAL CHEMISTRY

High-throughput generation, optimization and analysis of genome-scale metabolic models

(2010) Christopher S Henry et al.   NATURE BIOTECHNOLOGY

Messy biology and the origins of evolutionary innovations

(2010) Dan S Tawfik   Nature Chemical Biology

Ongoing and future developments at the Universal Protein Resource

(2010)   NUCLEIC ACIDS RESEARCH

Carbon dioxide fixation as a central redox cofactor recycling mechanism in bacteria

(2010) J. B. McKinlay et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

A Nitrospira metagenome illuminates the physiology and evolution of globally important nitrite-oxidizing bacteria

(2010) S. Lucker et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Characterization of the Central Metabolic Pathways in Thermoanaerobacter sp. Strain X514 via Isotopomer-Assisted Metabolite Analysis

(2009) X. Feng et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Scavenging of Cytosolic Octanoic Acid by Mutant LplA Lipoate Ligases Allows Growth of Escherichia coli Strains Lacking the LipB Octanoyltransferase of Lipoic Acid Synthesis

(2009) F. A. M. Hermes et al.   JOURNAL OF BACTERIOLOGY

Opening a New Path to Lipoic Acid

(2009) C. O. Rock   JOURNAL OF BACTERIOLOGY

Investigation of Carbon Metabolism in "Dehalococcoides ethenogenes" Strain 195 by Use of Isotopomer and Transcriptomic Analyses

(2009) Y. J. Tang et al.   JOURNAL OF BACTERIOLOGY

TheThermoplasma acidophilumLplA-LplB Complex Defines a New Class of Bipartite Lipoate-protein Ligases

(2009) Quin H. Christensen et al.   JOURNAL OF BIOLOGICAL CHEMISTRY

New Insights into the Respiratory Chains of the Chemolithoautotrophic and Hyperthermophilic BacteriumAquifex aeolicus

(2009) Marianne Guiral et al.   JOURNAL OF PROTEOME RESEARCH

Alternative isoleucine synthesis pathway in cyanobacterial species

(2009) B. Wu et al.   MICROBIOLOGY-SGM

Carbohydrate Metabolism and Carbon Fixation in Roseobacter denitrificans OCh114

(2009) Kuo-Hsiang Tang et al.   PLoS One

On the chimeric nature, thermophilic origin, and phylogenetic placement of the Thermotogales

(2009) O. Zhaxybayeva et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Menaquinone as pool quinone in a purple bacterium

(2009) B. Schoepp-Cothenet et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Origin of the Sox multienzyme complex system in ancient thermophilic bacteria and coevolution of its constituent proteins

(2009) Wriddhiman Ghosh et al.   RESEARCH IN MICROBIOLOGY

Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima

(2009) Y. Zhang et al.   SCIENCE

Annotation Error in Public Databases: Misannotation of Molecular Function in Enzyme Superfamilies

(2009) Alexandra M. Schnoes et al.   PLoS Computational Biology

iBsu1103: a new genome-scale metabolic model of Bacillus subtilis based on SEED annotations

(2009) Christopher S Henry et al.   GENOME BIOLOGY

Structural biology of the purine biosynthetic pathway

(2008) Y. Zhang et al.   CELLULAR AND MOLECULAR LIFE SCIENCES

Nondecarboxylating and Decarboxylating Isocitrate Dehydrogenases: Oxalosuccinate Reductase as an Ancestral Form of Isocitrate Dehydrogenase

(2008) M. Aoshima et al.   JOURNAL OF BACTERIOLOGY

Elucidation of an Alternate Isoleucine Biosynthesis Pathway in Geobacter sulfurreducens

(2008) C. Risso et al.   JOURNAL OF BACTERIOLOGY

The rise of atmospheric oxygen

(2008) Lee R. Kump   NATURE

Membrane lipid homeostasis in bacteria

(2008) Yong-Mei Zhang et al.   NATURE REVIEWS MICROBIOLOGY

Reconstruction of biochemical networks in microorganisms

(2008) Adam M. Feist et al.   NATURE REVIEWS MICROBIOLOGY

When did oxygenic photosynthesis evolve?

(2008) R. Buick   PHILOSOPHICAL TRANSACTIONS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES