Seeing the Tree of Life behind the phylogenetic forest

Genomic pacemakers or ticking clocks?

(2012) Mary Muers   NATURE REVIEWS GENETICS

Lateral gene transfer as a support for the tree of life

(2012) S. S. Abby et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Universal Pacemaker of Genome Evolution

(2012) Sagi Snir et al.   PLoS Computational Biology

How stands the Tree of Life a century and a half after The Origin?

(2011) Maureen A O'Malley et al.   Biology Direct

Comparison of Phylogenetic Trees and Search for a Central Trend in the “Forest of Life”

(2011) Eugene V. Koonin et al.   JOURNAL OF COMPUTATIONAL BIOLOGY

Phylogenomic networks

(2011) Tal Dagan   TRENDS IN MICROBIOLOGY

The Tree and Net Components of Prokaryote Evolution

(2010) Pere Puigbò et al.   Genome Biology and Evolution

Harvesting Evolutionary Signals in a Forest of Prokaryotic Gene Trees

(2010) K. Schliep et al.   MOLECULAR BIOLOGY AND EVOLUTION

En route to a genome-based classification of Archaea and Bacteria?

(2010) H.-P. Klenk et al.   SYSTEMATIC AND APPLIED MICROBIOLOGY

Prokaryotic evolution and the tree of life are two different things

(2009) Eric Bapteste et al.   Biology Direct

The fundamental units, processes and patterns of evolution, and the Tree of Life conundrum

(2009) Eugene V Koonin et al.   Biology Direct

The universal distribution of evolutionary rates of genes and distinct characteristics of eukaryotic genes of different apparent ages

(2009) Y. I. Wolf et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA