Dynamic Roles for Small RNAs and DNA Methylation during Ovule and Fiber Development in Allotetraploid Cotton
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Title
Dynamic Roles for Small RNAs and DNA Methylation during Ovule and Fiber Development in Allotetraploid Cotton
Authors
Keywords
DNA methylation, Ovules, Small interfering RNAs, Gene expression, Fiber crops, Methylation, Cotton, Leaves
Journal
PLoS Genetics
Volume 11, Issue 12, Pages e1005724
Publisher
Public Library of Science (PLoS)
Online
2015-12-29
DOI
10.1371/journal.pgen.1005724
References
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- (2015) Tianzhen Zhang et al. NATURE BIOTECHNOLOGY
- MethylC-seq library preparation for base-resolution whole-genome bisulfite sequencing
- (2015) Mark A Urich et al. Nature Protocols
- Stress induced gene expression drives transient DNA methylation changes at adjacent repetitive elements
- (2015) David Secco et al. eLife
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- (2014) D. W.- K. Ng et al. PLANT CELL
- Genetic and DNA Methylation Changes in Cotton (Gossypium) Genotypes and Tissues
- (2014) Kenji Osabe et al. PLoS One
- Polyploidy and small RNA regulation of cotton fiber development
- (2014) Xueying Guan et al. TRENDS IN PLANT SCIENCE
- Comparative Evolutionary and Developmental Dynamics of the Cotton (Gossypium hirsutum) Fiber Transcriptome
- (2014) Mi-Jeong Yoo et al. PLoS Genetics
- The Arabidopsis Nucleosome Remodeler DDM1 Allows DNA Methyltransferases to Access H1-Containing Heterochromatin
- (2013) Assaf Zemach et al. CELL
- The maize methylome influences mRNA splice sites and reveals widespread paramutation-like switches guided by small RNA
- (2013) M. Regulski et al. GENOME RESEARCH
- Epigenome-wide inheritance of cytosine methylation variants in a recombinant inbred population
- (2013) R. J. Schmitz et al. GENOME RESEARCH
- Genome-Wide Analysis of DNA Methylation in Soybean
- (2013) Qing-Xin Song et al. Molecular Plant
- The genome of the recently domesticated crop plant sugar beet (Beta vulgaris)
- (2013) Juliane C. Dohm et al. NATURE
- Polymerase IV occupancy at RNA-directed DNA methylation sites requires SHH1
- (2013) Julie A. Law et al. NATURE
- Non-CG methylation patterns shape the epigenetic landscape in Arabidopsis
- (2013) Hume Stroud et al. NATURE STRUCTURAL & MOLECULAR BIOLOGY
- A Potential Role for CHH DNA Methylation in Cotton Fiber Growth Patterns
- (2013) Xiang Jin et al. PLoS One
- CHH islands: de novo DNA methylation in near-gene chromatin regulation in maize
- (2012) J. I. Gent et al. GENOME RESEARCH
- Maternal siRNAs as regulators of parental genome imbalance and gene expression in endosperm of Arabidopsis seeds
- (2012) J. Lu et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- ‘Leveling’ the playing field for analyses of single-base resolution DNA methylomes
- (2012) Matthew D. Schultz et al. TRENDS IN GENETICS
- Bismark: a flexible aligner and methylation caller for Bisulfite-Seq applications
- (2011) Felix Krueger et al. BIOINFORMATICS
- Multisubunit RNA polymerases IV and V: purveyors of non-coding RNA for plant gene silencing
- (2011) Jeremy R. Haag et al. NATURE REVIEWS MOLECULAR CELL BIOLOGY
- Activation of Arabidopsis Seed Hair Development by Cotton Fiber-Related Genes
- (2011) Xueying Guan et al. PLoS One
- Genome sequence of the palaeopolyploid soybean
- (2010) Jeremy Schmutz et al. NATURE
- Transcript assembly and quantification by RNA-Seq reveals unannotated transcripts and isoform switching during cell differentiation
- (2010) Cole Trapnell et al. NATURE BIOTECHNOLOGY
- Establishing, maintaining and modifying DNA methylation patterns in plants and animals
- (2010) Julie A. Law et al. NATURE REVIEWS GENETICS
- GhMYB25-like: a key factor in early cotton fibre development
- (2010) Sally-Ann Walford et al. PLANT JOURNAL
- Conservation and divergence of methylation patterning in plants and animals
- (2010) S. Feng et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- Genome-Wide Evolutionary Analysis of Eukaryotic DNA Methylation
- (2010) A. Zemach et al. SCIENCE
- TopHat: discovering splice junctions with RNA-Seq
- (2009) Cole Trapnell et al. BIOINFORMATICS
- Intergenic transcription by RNA Polymerase II coordinates Pol IV and Pol V in siRNA-directed transcriptional gene silencing in Arabidopsis
- (2009) B. Zheng et al. GENES & DEVELOPMENT
- Mutations in retrotransposon AtCOPIA4 compromises resistance to Hyaloperonospora parasitica in Arabidopsis thaliana
- (2009) Yi-Hong Wang et al. GENETICS AND MOLECULAR BIOLOGY
- Unexpected consequences of a sudden and massive transposon amplification on rice gene expression
- (2009) Ken Naito et al. NATURE
- Small RNAs serve as a genetic buffer against genomic shock in Arabidopsis interspecific hybrids and allopolyploids
- (2009) M. Ha et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- The B73 Maize Genome: Complexity, Diversity, and Dynamics
- (2009) P. S. Schnable et al. SCIENCE
- Genome-wide analysis reveals rapid and dynamic changes in miRNA and siRNA sequence and expression during ovule and fiber development in allotetraploid cotton (Gossypium hirsutum L.)
- (2009) Mingxiong Pang et al. GENOME BIOLOGY
- Duplicate gene expression in allopolyploid Gossypium reveals two temporally distinct phases of expression evolution
- (2008) Lex Flagel et al. BMC BIOLOGY
- Highly Integrated Single-Base Resolution Maps of the Epigenome in Arabidopsis
- (2008) Ryan Lister et al. CELL
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