Comparative Evolutionary and Developmental Dynamics of the Cotton (Gossypium hirsutum) Fiber Transcriptome

A Bountiful Harvest: Genomic Insights into Crop Domestication Phenotypes

(2013) Kenneth M. Olsen et al.   Annual Review of Plant Biology

Integrated metabolomics and genomics analysis provides new insights into the fiber elongation process in Ligon lintless-2 mutant cotton (Gossypium hirsutum L.)

(2013) Marina Naoumkina et al.   BMC GENOMICS

Proteomic profiling of developing cotton fibers from wild and domesticatedGossypium barbadense

(2013) Guanjing Hu et al.   NEW PHYTOLOGIST

A Genetic and Metabolic Analysis Revealed that Cotton Fiber Cell Development Was Retarded by Flavonoid Naringenin

(2013) J. Tan et al.   PLANT PHYSIOLOGY

A Fasciclin-Like Arabinogalactan Protein, GhFLA1, Is Involved in Fiber Initiation and Elongation of Cotton

(2013) G.-Q. Huang et al.   PLANT PHYSIOLOGY

The Cotton Transcription Factor TCP14 Functions in Auxin-Mediated Epidermal Cell Differentiation and Elongation

(2013) M.-Y. Wang et al.   PLANT PHYSIOLOGY

Analysis of Flavonoids and the Flavonoid Structural Genes in Brown Fiber of Upland Cotton

(2013) Hongjie Feng et al.   PLoS One

PolyCat: A Resource for Genome Categorization of Sequencing Reads From Allopolyploid Organisms

(2013) Justin T. Page et al.   G3-Genes Genomes Genetics

Crop plants as models for understanding plant adaptation and diversification

(2013) Kenneth M. Olsen et al.   Frontiers in Plant Science

Functional genomics of fuzzless-lintless mutant of Gossypium hirsutum L. cv. MCU5 reveal key genes and pathways involved in cotton fibre initiation and elongation

(2012) Kethireddy Venkata Padmalatha et al.   BMC GENOMICS

Transcriptome analysis reveals critical genes and key pathways for early cotton fiber elongation in Ligon lintless-1 mutant

(2012) Kang Liu et al.   GENOMICS

Homoeolog expression bias and expression level dominance in allopolyploid cotton

(2012) M-J Yoo et al.   HEREDITY

GbTCP, a cotton TCP transcription factor, confers fibre elongation and root hair development by a complex regulating system

(2012) Juan Hao et al.   JOURNAL OF EXPERIMENTAL BOTANY

Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres

(2012) Andrew H. Paterson et al.   NATURE

Homoeolog expression bias and expression level dominance in allopolyploids

(2012) C. E. Grover et al.   NEW PHYTOLOGIST

Deep Sequencing Reveals Differences in the Transcriptional Landscapes of Fibers from Two Cultivated Species of Cotton

(2012) Jean-Marc Lacape et al.   PLoS One

Cotton fiber: a powerful single-cell model for cell wall and cellulose research

(2012) Candace H. Haigler et al.   Frontiers in Plant Science

The CELLULOSE SYNTHASE-LIKE A and CELLULOSE SYNTHASE-LIKE C families: recent advances and future perspectives

(2012) Aaron H. Liepman et al.   Frontiers in Plant Science

A combined functional and structural genomics approach identified an EST-SSR marker with complete linkage to the Ligon lintless-2 genetic locus in cotton (Gossypium hirsutum L.)

(2011) Doug J Hinchliffe et al.   BMC GENOMICS

The grapevine guard cell-related VvMYB60 transcription factor is involved in the regulation of stomatal activity and is differentially expressed in response to ABA and osmotic stress

(2011) Massimo Galbiati et al.   BMC PLANT BIOLOGY

MEGA5: Molecular Evolutionary Genetics Analysis Using Maximum Likelihood, Evolutionary Distance, and Maximum Parsimony Methods

(2011) K. Tamura et al.   MOLECULAR BIOLOGY AND EVOLUTION

Characterization of PROFILIN genes from allotetraploid (Gossypium hirsutum) cotton and its diploid progenitors and expression analysis in cotton genotypes differing in fiber characteristics

(2011) Anagnostis Argiriou et al.   MOLECULAR BIOLOGY REPORTS

Ancestral polyploidy in seed plants and angiosperms

(2011) Yuannian Jiao et al.   NATURE

A dual role for MYB60 in stomatal regulation and root growth of Arabidopsis thaliana under drought stress

(2011) Jee Eun Oh et al.   PLANT MOLECULAR BIOLOGY

Genome-wide transcriptomic analysis of cotton under drought stress reveal significant down-regulation of genes and pathways involved in fibre elongation and up-regulation of defense responsive genes

(2011) Kethireddy Venkata Padmalatha et al.   PLANT MOLECULAR BIOLOGY

Parallel up-regulation of the profilin gene family following independent domestication of diploid and allopolyploid cotton (Gossypium)

(2011) Y. Bao et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Fast and SNP-tolerant detection of complex variants and splicing in short reads

(2010) T. D. Wu et al.   BIOINFORMATICS

Gene expression in developing fibres of Upland cotton (Gossypium hirsutum L.) was massively altered by domestication

(2010) Ryan A Rapp et al.   BMC BIOLOGY

Phylogenetically Distinct Cellulose Synthase Genes Support Secondary Wall Thickening in Arabidopsis Shoot Trichomes and Cotton Fiber

(2010) Lissete Betancur et al.   Journal of Integrative Plant Biology

Gibberellin 20-oxidase promotes initiation and elongation of cotton fibers by regulating gibberellin synthesis

(2010) Yue-Hua Xiao et al.   JOURNAL OF PLANT PHYSIOLOGY

agriGO: a GO analysis toolkit for the agricultural community

(2010) Zhou Du et al.   NUCLEIC ACIDS RESEARCH

The Arabidopsis cysteine-rich protein GASA4 promotes GA responses and exhibits redox activity in bacteria and in planta

(2010) Lior Rubinovich et al.   PLANT JOURNAL

Fasciclin-like arabinogalactan proteins: specialization for stem biomechanics and cell wall architecture in Arabidopsis and Eucalyptus

(2010) Colleen P. MacMillan et al.   PLANT JOURNAL

GhMYB25-like: a key factor in early cotton fibre development

(2010) Sally-Ann Walford et al.   PLANT JOURNAL

Update on Mechanisms of Plant Cell Wall Biosynthesis: How Plants Make Cellulose and Other (1->4)- -D-Glycans

(2010) N. C. Carpita   PLANT PHYSIOLOGY

A tomato bZIP transcription factor, SlAREB, is involved in water deficit and salt stress response

(2010) Tsai-Hung Hsieh et al.   PLANTA

An Arabidopsis senescence-associated protein SAG29 regulates cell viability under high salinity

(2010) Pil Joon Seo et al.   PLANTA

Differential expression analysis for sequence count data

(2010) Simon Anders et al.   GENOME BIOLOGY

edgeR: a Bioconductor package for differential expression analysis of digital gene expression data

(2009) M. D. Robinson et al.   BIOINFORMATICS

Parallel expression evolution of oxidative stress-related genes in fiber from wild and domesticated diploid and polyploid cotton (Gossypium)

(2009) Bhupendra Chaudhary et al.   BMC GENOMICS

Cotton GhPOX1 encoding plant class III peroxidase may be responsible for the high level of reactive oxygen species production that is related to cotton fiber elongation

(2009) Wenqian Mei et al.   Journal of Genetics and Genomics

Transcript Profiling During Fiber Development Identifies Pathways in Secondary Metabolism and Cell Wall Structure That May Contribute to Cotton Fiber Quality

(2009) Yves Al-Ghazi et al.   PLANT AND CELL PHYSIOLOGY

A Single Vegetative Actin Isovariant Overexpressed under the Control of Multiple Regulatory Sequences Is Sufficient for Normal Arabidopsis Development

(2009) M. K. Kandasamy et al.   PLANT CELL

The GLABRA2 homeodomain protein directly regulatesCESA5andXTH17gene expression in Arabidopsis roots

(2009) Rumi Tominaga-Wada et al.   PLANT JOURNAL

The MYB transcription factor GhMYB25 regulates early fibre and trichome development

(2009) Adriane Machado et al.   PLANT JOURNAL

LEA (Late Embryogenesis Abundant) proteins and their encoding genes in Arabidopsis thaliana

(2008) Michaela Hundertmark et al.   BMC GENOMICS

Global analysis of gene expression in cotton fibers from wild and domesticatedGossypium barbadense

(2008) Bhupendra Chaudhary et al.   EVOLUTION & DEVELOPMENT

The R2R3 MYB Transcription Factor GhMYB109 Is Required for Cotton Fiber Development

(2008) L. Pu et al.   GENETICS

RNA-seq: An assessment of technical reproducibility and comparison with gene expression arrays

(2008) J. C. Marioni et al.   GENOME RESEARCH

Comparative Proteomic Analysis Provides New Insights into the Fiber Elongating Process in Cotton

(2008) Yi-Wei Yang et al.   JOURNAL OF PROTEOME RESEARCH

RNA-Seq: a revolutionary tool for transcriptomics

(2008) Zhong Wang et al.   NATURE REVIEWS GENETICS

Arabidopsis R2R3-MYB transcription factor AtMYB60 functions as a transcriptional repressor of anthocyanin biosynthesis in lettuce (Lactuca sativa)

(2008) Jong-Sug Park et al.   PLANT CELL REPORTS

Carbohydrate mobilization and gene regulatory profile in the pseudobulb of Oncidium orchid during the flowering process

(2008) Chih-Yu Wang et al.   PLANTA

The Evolution of Spinnable Cotton Fiber Entailed Prolonged Development and a Novel Metabolism

(2008) Ran Hovav et al.   PLoS Genetics