Small regulatory RNAs from low-GC Gram-positive bacteria

Analysis of the Small RNA Transcriptional Response in Multidrug-Resistant Staphylococcus aureus after Antimicrobial Exposure

(2013) Benjamin P. Howden et al.   ANTIMICROBIAL AGENTS AND CHEMOTHERAPY

RNA-Seq of Bacillus licheniformis: active regulatory RNA features expressed within a productive fermentation

(2013) Sandra Wiegand et al.   BMC GENOMICS

The Clostridium small RNome that responds to stress: the paradigm and importance of toxic metabolite stress in C. acetobutylicum

(2013) Keerthi P Venkataramanan et al.   BMC GENOMICS

The importance of regulatory RNAs in Staphylococcus aureus

(2013) Arnaud Tomasini et al.   INFECTION GENETICS AND EVOLUTION

Unique Regulatory Mechanism of Sporulation and Enterotoxin Production in Clostridium perfringens

(2013) K. Ohtani et al.   JOURNAL OF BACTERIOLOGY

ArtR, a novel sRNA of Staphylococcus aureus, regulates α-toxin expression by targeting the 5′ UTR of sarT mRNA

(2013) Ting Xue et al.   MEDICAL MICROBIOLOGY AND IMMUNOLOGY

RNA-seq-based comparative transcriptome analysis of the syngas-utilizing bacterium Clostridium ljungdahlii DSM 13528 grown autotrophically and heterotrophically

(2013) Yang Tan et al.   Molecular BioSystems

Target evaluation of the non-coding csRNAs reveals a link of the two-component regulatory system CiaRH to competence control inStreptococcus pneumoniae R6

(2013) Anke Schnorpfeil et al.   MOLECULAR MICROBIOLOGY

One antitoxin—two functions: SR4 controls toxin mRNA decay and translation

(2013) Natalie Jahn et al.   NUCLEIC ACIDS RESEARCH

Novel Regulatory Small RNAs in Streptococcus pyogenes

(2013) Rafael A. Tesorero et al.   PLoS One

Genome-Wide Identification of Regulatory RNAs in the Human Pathogen Clostridium difficile

(2013) Olga A. Soutourina et al.   PLoS Genetics

Mobile Genetic Element SCCmec-encoded psm-mec RNA Suppresses Translation of agrA and Attenuates MRSA Virulence

(2013) Chikara Kaito et al.   PLoS Pathogens

Lack of interchangeability of Hfq-like proteins

(2012) Tatiana Rochat et al.   BIOCHIMIE

Identification of novel growth phase- and media-dependent small non-coding RNAs in Streptococcus pyogenes M49 using intergenic tiling arrays

(2012) Nadja Patenge et al.   BMC GENOMICS

Acting antisense: plasmid- and chromosome-encoded sRNAs from Gram-positive bacteria

(2012) Sabine Brantl   Future Microbiology

Characterization of SSR42, a Novel Virulence Factor Regulatory RNA That Contributes to the Pathogenesis of a Staphylococcus aureus USA300 Representative

(2012) J. M. Morrison et al.   JOURNAL OF BACTERIOLOGY

A Global Investigation of the Bacillus subtilis Iron-Sparing Response Identifies Major Changes in Metabolism

(2012) G. T. Smaldone et al.   JOURNAL OF BACTERIOLOGY

The FsrA sRNA and FbpB Protein Mediate the Iron-Dependent Induction of the Bacillus subtilis LutABC Iron-Sulfur-Containing Oxidases

(2012) G. T. Smaldone et al.   JOURNAL OF BACTERIOLOGY

Functional and Structural Insights of aStaphylococcus aureusApoptotic-like Membrane Peptide from a Toxin-Antitoxin Module

(2012) Nour Sayed et al.   JOURNAL OF BIOLOGICAL CHEMISTRY

The HtrA Protease fromStreptococcus pneumoniaeDigests Both Denatured Proteins and the Competence-stimulating Peptide

(2012) Marco Cassone et al.   JOURNAL OF BIOLOGICAL CHEMISTRY

Construction of a modular plasmid family for chromosomal integration in Bacillus subtilis

(2012) Matthias Gimpel et al.   JOURNAL OF MICROBIOLOGICAL METHODS

BsrG/SR4 from Bacillus subtilis- the first temperature-dependent type I toxin-antitoxin system

(2012) Natalie Jahn et al.   MOLECULAR MICROBIOLOGY

Comparative transcriptomics of pathogenic and non-pathogenic Listeria species

(2012) Omri Wurtzel et al.   Molecular Systems Biology

The excludon: a new concept in bacterial antisense RNA-mediated gene regulation

(2012) Nina Sesto et al.   NATURE REVIEWS MICROBIOLOGY

SR1—a small RNA with two remarkably conserved functions

(2012) Matthias Gimpel et al.   NUCLEIC ACIDS RESEARCH

The non-coding RNA world of the bacterial pathogenListeria monocytogenes

(2012) Jeffery R. Mellin et al.   RNA Biology

Type I toxin-antitoxin systems inBacillus subtilis

(2012) Sylvain Durand et al.   RNA Biology

Bacterial type I toxin-antitoxin systems

(2012) Sabine Brantl   RNA Biology

Small RNAs in streptococci

(2012) Anaïs Le Rhun et al.   RNA Biology

An effort to make sense of antisense transcription in bacteria

(2012) Iñigo Lasa et al.   RNA Biology

Identification of 88 regulatory small RNAs in the TIGR4 strain of the human pathogen Streptococcus pneumoniae

(2012) P. Acebo et al.   RNA

Condition-Dependent Transcriptome Reveals High-Level Regulatory Architecture in Bacillus subtilis

(2012) P. Nicolas et al.   SCIENCE

The Essential Function of B. subtilis RNase III Is to Silence Foreign Toxin Genes

(2012) Sylvain Durand et al.   PLoS Genetics

Control of Virulence by Small RNAs in Streptococcus pneumoniae

(2012) Beth Mann et al.   PLoS Pathogens

Identification of genes for small non-coding RNAs that belong to the regulon of the two-component regulatory system CiaRH in Streptococcus

(2011) Patrick Marx et al.   BMC GENOMICS

A Novel Toxin Regulator, the CPE1446-CPE1447 Protein Heteromeric Complex, Controls Toxin Genes in Clostridium perfringens

(2011) N. Obana et al.   JOURNAL OF BACTERIOLOGY

Effect of new alleles of the histidine kinase gene ciaH on the activity of the response regulator CiaR in Streptococcus pneumoniae R6

(2011) M. Muller et al.   MICROBIOLOGY-SGM

CRISPR RNA maturation by trans-encoded small RNA and host factor RNase III

(2011) Elitza Deltcheva et al.   NATURE

Hfq and its constellation of RNA

(2011) Jörg Vogel et al.   NATURE REVIEWS MICROBIOLOGY

A cis-antisense RNA acts in trans in Staphylococcus aureus to control translation of a human cytolytic peptide

(2011) Nour Sayed et al.   NATURE STRUCTURAL & MOLECULAR BIOLOGY

The intracellular sRNA transcriptome of Listeria monocytogenes during growth in macrophages

(2011) Mobarak A. Mraheil et al.   NUCLEIC ACIDS RESEARCH

A simple and efficient method to search for selected primary transcripts: non-coding and antisense RNAs in the human pathogen Enterococcus faecalis

(2011) Aymeric Fouquier d’Hérouel et al.   NUCLEIC ACIDS RESEARCH

A highly conserved protein of unknown function in Sinorhizobium meliloti affects sRNA regulation similar to Hfq

(2011) Shree P. Pandey et al.   NUCLEIC ACIDS RESEARCH

A Small RNA Controls Expression of the Chitinase ChiA in Listeria monocytogenes

(2011) Jesper S. Nielsen et al.   PLoS One

Genome-Wide Identification of Small RNAs in the Opportunistic Pathogen Enterococcus faecalis V583

(2011) Kouki Shioya et al.   PLoS One

Genome-wide antisense transcription drives mRNA processing in bacteria

(2011) I. Lasa et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

CsfG, a sporulation-specific, small non-coding RNA highly conserved in endospore formers

(2011) Antonin Marchais et al.   RNA Biology

Small RNAs in the Genus Clostridium

(2011) Y. Chen et al.   mBio

Identification of novel non-coding small RNAs from Streptococcus pneumoniae TIGR4 using high-resolution genome tiling arrays

(2010) Ranjit Kumar et al.   BMC GENOMICS

RNAi-dependent formation of heterochromatin and its diverse functions

(2010) Shiv IS Grewal   CURRENT OPINION IN GENETICS & DEVELOPMENT

RNAs actively cycle on the Sm-like protein Hfq

(2010) A. Fender et al.   GENES & DEVELOPMENT

Small Genes under Sporulation Control in the Bacillus subtilis genome

(2010) M. Schmalisch et al.   JOURNAL OF BACTERIOLOGY

Identification of differentially expressed small non-protein-coding RNAs in Staphylococcus aureus displaying both the normal and the small-colony variant phenotype

(2010) Luay F. Abu-Qatouseh et al.   JOURNAL OF MOLECULAR MEDICINE-JMM

A dual-function sRNA from B. subtilis: SR1 acts as a peptide encoding mRNA on the gapA operon

(2010) Matthias Gimpel et al.   MOLECULAR MICROBIOLOGY

The group A Streptococcus small regulatory RNA FasX enhances streptokinase activity by increasing the stability of the ska mRNA transcript

(2010) Esmeralda Ramirez-Peña et al.   MOLECULAR MICROBIOLOGY

Experimental discovery of small RNAs in Staphylococcus aureus reveals a riboregulator of central metabolism

(2010) Chantal Bohn et al.   NUCLEIC ACIDS RESEARCH

Identification of regulatory RNAs in Bacillus subtilis

(2010) Irnov Irnov et al.   NUCLEIC ACIDS RESEARCH

Cartography of Methicillin-Resistant S. aureus Transcripts: Detection, Orientation and Temporal Expression during Growth Phase and Stress Conditions

(2010) Marie Beaume et al.   PLoS One

Hfq Is a Global Regulator That Controls the Pathogenicity of Staphylococcus aureus

(2010) Yu Liu et al.   PLoS One

A Staphylococcus aureus Small RNA Is Required for Bacterial Virulence and Regulates the Expression of an Immune-Evasion Molecule

(2010) Svetlana Chabelskaya et al.   PLoS Pathogens

Staphylococcus aureus RNAIII Binds to Two Distant Regions of coa mRNA to Arrest Translation and Promote mRNA Degradation

(2010) Clément Chevalier et al.   PLoS Pathogens

Deep RNA sequencing of L. monocytogenes reveals overlapping and extensive stationary phase and sigma B-dependent transcriptomes, including multiple highly transcribed noncoding RNAs

(2009) Haley F Oliver et al.   BMC GENOMICS

A trans-Acting Riboswitch Controls Expression of the Virulence Regulator PrfA in Listeria monocytogenes

(2009) Edmund Loh et al.   CELL

An overview of RNAs with regulatory functions in gram-positive bacteria

(2009) Pascale Romby et al.   CELLULAR AND MOLECULAR LIFE SCIENCES

Bacterial chromosome-encoded small regulatory RNAs

(2009) Sabine Brantl   Future Microbiology

Single-pass classification of all noncoding sequences in a bacterial genome using phylogenetic profiles

(2009) A. Marchais et al.   GENOME RESEARCH

CodY Activates Transcription of a Small RNA in Bacillus subtilis

(2009) H. Preis et al.   JOURNAL OF BACTERIOLOGY

Identification and Characterization of Noncoding Small RNAs in Streptococcus pneumoniae Serotype 2 Strain D39

(2009) H.-C. T. Tsui et al.   JOURNAL OF BACTERIOLOGY

The Transcriptional Repressor CcpN fromBacillus subtilisUses Different Repression Mechanisms at Different Promoters

(2009) Andreas Licht et al.   JOURNAL OF BIOLOGICAL CHEMISTRY

The transcriptionally active regions in the genome ofBacillus subtilis

(2009) Simon Rasmussen et al.   MOLECULAR MICROBIOLOGY

The Listeria transcriptional landscape from saprophytism to virulence

(2009) Alejandro Toledo-Arana et al.   NATURE

Defining a role for Hfq in Gram-positive bacteria: evidence for Hfq-dependent antisense regulation in Listeria monocytogenes

(2009) Jesper Sejrup Nielsen et al.   NUCLEIC ACIDS RESEARCH

A search for small noncoding RNAs in Staphylococcus aureus reveals a conserved sequence motif for regulation

(2009) Thomas Geissmann et al.   NUCLEIC ACIDS RESEARCH

A Genome-Wide Analysis of Small Regulatory RNAs in the Human Pathogen Group A Streptococcus

(2009) Nataly Perez et al.   PLoS One

Novel small RNA-encoding genes in the intergenic regions of Bacillus subtilis

(2008) Shinichi Saito et al.   GENE

Characterization of Genes Regulated Directly by the VirR/VirS System in Clostridium perfringens

(2008) K. Okumura et al.   JOURNAL OF BACTERIOLOGY

Extracytoplasmic Function σ Factors Regulate Expression of theBacillus subtilis yabEGene via acis-Acting Antisense RNA

(2008) Warawan Eiamphungporn et al.   JOURNAL OF BACTERIOLOGY

Identification of Ligands Affecting the Activity of the Transcriptional Repressor CcpN from Bacillus subtilis

(2008) Andreas Licht et al.   JOURNAL OF MOLECULAR BIOLOGY

S-box and T-box riboswitches and antisense RNA control a sulfur metabolic operon of Clostridium acetobutylicum

(2008) Gaëlle André et al.   NUCLEIC ACIDS RESEARCH

The Bacillus subtilis iron-sparing response is mediated by a Fur-regulated small RNA and three small, basic proteins

(2008) A. Gaballa et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA