A simple and efficient method to search for selected primary transcripts: non-coding and antisense RNAs in the human pathogen Enterococcus faecalis

Comprehensive comparative-genomic analysis of Type 2 toxin-antitoxin systems and related mobile stress response systems in prokaryotes

(2012) Kira S Makarova et al.   Biology Direct

Genome-based insights into the evolution of enterococci

(2011) W. van Schaik et al.   CLINICAL MICROBIOLOGY AND INFECTION

Bacterial Antisense RNAs: How Many Are There, and What Are They Doing?

(2010) Maureen Kiley Thomason et al.   Annual Review of Genetics

Persister Cells

(2010) Kim Lewis   Annual Review of Microbiology

The multifaceted capacity of Dps proteins to combat bacterial stress conditions: Detoxification of iron and hydrogen peroxide and DNA binding

(2010) Emilia Chiancone et al.   BIOCHIMICA ET BIOPHYSICA ACTA-GENERAL SUBJECTS

Deciphering the physiological blueprint of a bacterial cell

(2010) Alejandro Toledo-Arana et al.   BIOESSAYS

A Bacterial mRNA Leader that Employs Different Mechanisms to Sense Disparate Intracellular Signals

(2010) Sun-Yang Park et al.   CELL

High-Quality Draft Genome Sequences of 28 Enterococcus sp. Isolates

(2010) K. L. Palmer et al.   JOURNAL OF BACTERIOLOGY

A dual-function sRNA from B. subtilis: SR1 acts as a peptide encoding mRNA on the gapA operon

(2010) Matthias Gimpel et al.   MOLECULAR MICROBIOLOGY

The primary transcriptome of the major human pathogen Helicobacter pylori

(2010) Cynthia M. Sharma et al.   NATURE

A novel antisense RNA regulates at transcriptional level the virulence gene icsA of Shigella flexneri

(2010) Mara Giangrossi et al.   NUCLEIC ACIDS RESEARCH

Experimental discovery of small RNAs in Staphylococcus aureus reveals a riboregulator of central metabolism

(2010) Chantal Bohn et al.   NUCLEIC ACIDS RESEARCH

Abundance of type I toxin–antitoxin systems in bacteria: searches for new candidates and discovery of novel families

(2010) Elizabeth M. Fozo et al.   NUCLEIC ACIDS RESEARCH

Northern blot detection of endogenous small RNAs ( 14 nt) in bacterial total RNA extracts

(2010) B. M. Beckmann et al.   NUCLEIC ACIDS RESEARCH

Identification of regulatory RNAs in Bacillus subtilis

(2010) Irnov Irnov et al.   NUCLEIC ACIDS RESEARCH

The Extracytoplasmic Function Sigma Factor SigV Plays a Key Role in the Original Model of Lysozyme Resistance and Virulence of Enterococcus faecalis

(2010) André Le Jeune et al.   PLoS One

The Structural and Functional Diversity of Metabolite-Binding Riboswitches

(2009) Adam Roth et al.   Annual Review of Biochemistry

Small regulatory non-coding RNAs in bacteria: physiology and mechanistic aspects

(2009) Francis Repoila et al.   BIOLOGY OF THE CELL

A trans-Acting Riboswitch Controls Expression of the Virulence Regulator PrfA in Listeria monocytogenes

(2009) Edmund Loh et al.   CELL

An overview of RNAs with regulatory functions in gram-positive bacteria

(2009) Pascale Romby et al.   CELLULAR AND MOLECULAR LIFE SCIENCES

Bacterial chromosome-encoded small regulatory RNAs

(2009) Sabine Brantl   Future Microbiology

Caught at its own game: regulatory small RNA inactivated by an inducible transcript mimicking its target

(2009) N. Figueroa-Bossi et al.   GENES & DEVELOPMENT

A pH-responsive riboregulator

(2009) Gal Nechooshtan et al.   GENES & DEVELOPMENT

Single-pass classification of all noncoding sequences in a bacterial genome using phylogenetic profiles

(2009) A. Marchais et al.   GENOME RESEARCH

ace, Which Encodes an Adhesin in Enterococcus faecalis, Is Regulated by Ers and Is Involved in Virulence

(2009) F. Lebreton et al.   INFECTION AND IMMUNITY

Global Approaches for Finding Small RNA and Small Open Reading Frame Functions

(2009) K. M. Wassarman et al.   JOURNAL OF BACTERIOLOGY

Functional Genomics of Enterococcus faecalis: Multiple Novel Genetic Determinants for Biofilm Formation in the Core Genome

(2009) K. S. Ballering et al.   JOURNAL OF BACTERIOLOGY

Noncoding RNA of Glutamine Synthetase I Modulates Antibiotic Production in Streptomyces coelicolor A3(2)

(2009) D. D'Alia et al.   JOURNAL OF BACTERIOLOGY

Switching off small RNA regulation with trap-mRNA

(2009) Martin Overgaard et al.   MOLECULAR MICROBIOLOGY

Evidence for a major role of antisense RNAs in cyanobacterial gene regulation

(2009) Jens Georg et al.   Molecular Systems Biology

The Listeria transcriptional landscape from saprophytism to virulence

(2009) Alejandro Toledo-Arana et al.   NATURE

Prokaryotic transcriptomics: a new view on regulation, physiology and pathogenicity

(2009) Rotem Sorek et al.   NATURE REVIEWS GENETICS

Deep sequencing-based discovery of the Chlamydia trachomatis transcriptome

(2009) Marco Albrecht et al.   NUCLEIC ACIDS RESEARCH

A search for small noncoding RNAs in Staphylococcus aureus reveals a conserved sequence motif for regulation

(2009) Thomas Geissmann et al.   NUCLEIC ACIDS RESEARCH

Multiple posttranscriptional regulatory mechanisms partner to control ethanolamine utilization in Enterococcus faecalis

(2009) K. A. Fox et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Transcriptome Complexity in a Genome-Reduced Bacterium

(2009) M. Guell et al.   SCIENCE

Bacterial Toxin–Antitoxin Systems: More Than Selfish Entities?

(2009) Laurence Van Melderen et al.   PLoS Genetics

Comprehensive Functional Analysis of Mycobacterium tuberculosis Toxin-Antitoxin Systems: Implications for Pathogenesis, Stress Responses, and Evolution

(2009) Holly R. Ramage et al.   PLoS Genetics

Quorum Sensing in Staphylococci

(2008) Richard P. Novick et al.   Annual Review of Genetics

Dichotomous metabolism of Enterococcus faecalis induced by haematin starvation modulates colonic gene expression

(2008) T. D. Allen et al.   JOURNAL OF MEDICAL MICROBIOLOGY

In situ gene expression in cheese matrices: Application to a set of enterococcal genes

(2008) S. Makhzami et al.   JOURNAL OF MICROBIOLOGICAL METHODS

Overexpression of the LexA-regulated tisAB RNA in E. coli inhibits SOS functions; implications for regulation of the SOS response

(2008) R. Weel-Sneve et al.   NUCLEIC ACIDS RESEARCH

Large scale variation in Enterococcus faecalis illustrated by the genome analysis of strain OG1RF

(2008) Agathe Bourgogne et al.   GENOME BIOLOGY

Extracellular superoxide production by Enterococcus faecalis requires demethylmenaquinone and is attenuated by functional terminal quinol oxidases

(2003) Mark M. Huycke et al.   MOLECULAR MICROBIOLOGY