Glycobioinformatics: Current strategies and tools for data mining in MS-based glycoproteomics

linking metabolism to epigenetics through O-GlcNAcylation

(2012) John A. Hanover et al.   NATURE REVIEWS MOLECULAR CELL BIOLOGY

New Technologies for Glycomic Analysis: Toward a Systematic Understanding of the Glycome

(2011) John F. Rakus et al.   Annual Review of Analytical Chemistry

Cross Talk Between O-GlcNAcylation and Phosphorylation: Roles in Signaling, Transcription, and Chronic Disease

(2011) Gerald W. Hart et al.   Annual Review of Biochemistry

UniCarb-DB: a database resource for glycomic discovery

(2011) Catherine A. Hayes et al.   BIOINFORMATICS

Site occupancy and glycan compositional analysis of two soluble recombinant forms of the attachment glycoprotein of Hendra virus

(2011) Michelle L Colgrave et al.   GLYCOBIOLOGY

Simultaneous and Extensive Site-specific N- and O-Glycosylation Analysis in Protein Mixtures

(2011) Charles C. Nwosu et al.   JOURNAL OF PROTEOME RESEARCH

A Novel Two-Stage Tandem Mass Spectrometry Approach and Scoring Scheme for the Identification of O-GlcNAc Modified Peptides

(2011) Hannes Hahne et al.   JOURNAL OF THE AMERICAN SOCIETY FOR MASS SPECTROMETRY

Tandem mass spectrometry strategies for phosphoproteome analysis

(2011) Amanda M. Palumbo et al.   MASS SPECTROMETRY REVIEWS

Modification Site Localization Scoring Integrated into a Search Engine

(2011) Peter R. Baker et al.   MOLECULAR & CELLULAR PROTEOMICS

Integrated mass spectrometry–based analysis of plasma glycoproteins and their glycan modifications

(2011) Hong Wang et al.   Nature Protocols

UniCarbKB: Putting the pieces together for glycomics research

(2011) Matthew P. Campbell et al.   PROTEOMICS

Proteome-wide post-translational modification statistics: frequency analysis and curation of the swiss-prot database

(2011) George A. Khoury et al.   Scientific Reports

Glycomics Hits the Big Time

(2010) Gerald W. Hart et al.   CELL

Pathogen-Mediated Posttranslational Modifications: A Re-emerging Field

(2010) David Ribet et al.   CELL

Precision Mapping of an In Vivo N-Glycoproteome Reveals Rigid Topological and Sequence Constraints

(2010) Dorota F. Zielinska et al.   CELL

Bioinformatics and molecular modeling in glycobiology

(2010) Martin Frank et al.   CELLULAR AND MOLECULAR LIFE SCIENCES

Recent advances in the MS analysis of glycoproteins: Theoretical considerations

(2010) Iulia M. Lazar et al.   ELECTROPHORESIS

Glycoproteome Study in Myocardial Lesions Serum by Integrated Mass Spectrometry Approach: Preliminary Insights

(2010) Andrea Carpentieri et al.   EUROPEAN JOURNAL OF MASS SPECTROMETRY

Mass Spectrometric Analysis, Automated Identification and Complete Annotation of O-Linked Glycopeptides

(2010) Zsuzsa Darula et al.   EUROPEAN JOURNAL OF MASS SPECTROMETRY

Characterization of site-specific O-glycan structures within the mucin-like domain of α-dystroglycan from human skeletal muscle

(2010) Johanna Nilsson et al.   GLYCOBIOLOGY

EUROCarbDB: An open-access platform for glycoinformatics

(2010) C.-W. von der Lieth et al.   GLYCOBIOLOGY

ProteomeCommons.org Collaborative Annotation and Project Management Resource Integrated With the Tranche Repository

(2010) James A. Hill et al.   JOURNAL OF PROTEOME RESEARCH

Improving Software Performance for Peptide Electron Transfer Dissociation Data Analysis by Implementation of Charge State- and Sequence-Dependent Scoring

(2010) Peter R. Baker et al.   MOLECULAR & CELLULAR PROTEOMICS

Mass Spectrometry Based Glycoproteomics—From a Proteomics Perspective

(2010) Sheng Pan et al.   MOLECULAR & CELLULAR PROTEOMICS

Exploring genomes for glycosyltransferases

(2010) Sara Fasmer Hansen et al.   Molecular BioSystems

One-pipeline approach achieving glycoprotein identification and obtaining intact glycopeptide information by tandem mass spectrometry

(2010) Yaohan Chen et al.   Molecular BioSystems

A systematic approach to protein glycosylation analysis: a path through the maze

(2010) Karina Mariño et al.   Nature Chemical Biology

A guided tour of the Trans-Proteomic Pipeline

(2010) Eric W. Deutsch et al.   PROTEOMICS

Glycoproteomics and clinical applications

(2010) Yuan Tian et al.   Proteomics Clinical Applications

Protein quality control in the ER: The recognition of misfolded proteins

(2010) Pekka Määttänen et al.   SEMINARS IN CELL & DEVELOPMENTAL BIOLOGY

Enzymatic/Chemical Release of O-Glycans Allowing MS Analysis at High Sensitivity

(2009) John A. Goetz et al.   ANALYTICAL CHEMISTRY

Sialic acids as regulators of molecular and cellular interactions

(2009) Roland Schauer   CURRENT OPINION IN STRUCTURAL BIOLOGY

Application of LC/MS to proteomics studies: current status and future prospects

(2009) Guodong Chen et al.   DRUG DISCOVERY TODAY

N-glycan moieties of the crustacean egg yolk protein and their glycosylation sites

(2009) Ziv Roth et al.   GLYCOCONJUGATE JOURNAL

GlycoSpectrumScan: Fishing Glycopeptides from MS Spectra of Protease Digests of Human Colostrum sIgA

(2009) Nandan Deshpande et al.   JOURNAL OF PROTEOME RESEARCH

Generation of asparagine-linked glycan structure databases and their use

(2009) Hui Ying Gao   JOURNAL OF THE AMERICAN SOCIETY FOR MASS SPECTROMETRY

Comparison of Methods for ProfilingO-Glycosylation

(2009) Yoshinao Wada et al.   MOLECULAR & CELLULAR PROTEOMICS

Identification of protein O-GlcNAcylation sites using electron transfer dissociation mass spectrometry on native peptides

(2009) R. J. Chalkley et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Glycosylation diseases: Quo vadis?

(2008) Harry Schachter et al.   BIOCHIMICA ET BIOPHYSICA ACTA-MOLECULAR BASIS OF DISEASE

Glycan family analysis for deducing N-glycan topology from single MS

(2008) David Goldberg et al.   BIOINFORMATICS

GlycomeDB – integration of open-access carbohydrate structure databases

(2008) René Ranzinger et al.   BMC BIOINFORMATICS

GlycoCT—a unifying sequence format for carbohydrates

(2008) S. Herget et al.   CARBOHYDRATE RESEARCH

N-Glycoproteomics – An automated workflow approach

(2008) Sakari Joenväärä et al.   GLYCOBIOLOGY

GlycoWorkbench: A Tool for the Computer-Assisted Annotation of Mass Spectra of Glycans†

(2008) Alessio Ceroni et al.   JOURNAL OF PROTEOME RESEARCH

Elucidation of O-Glycosylation Structures of the β-Amyloid Precursor Protein by Liquid Chromatography−Mass Spectrometry Using Electron Transfer Dissociation and Collision Induced Dissociation

(2008) Irina Perdivara et al.   JOURNAL OF PROTEOME RESEARCH

A Perspective on the Maillard Reaction and the Analysis of Protein Glycation by Mass Spectrometry: Probing the Pathogenesis of Chronic Disease

(2008) Qibin Zhang et al.   JOURNAL OF PROTEOME RESEARCH

Combining Results from Lectin Affinity Chromatography and Glycocapture Approaches Substantially Improves the Coverage of the Glycoproteome

(2008) Claudia A. McDonald et al.   MOLECULAR & CELLULAR PROTEOMICS

In-depth Analysis of Tandem Mass Spectrometry Data from Disparate Instrument Types

(2008) Robert J. Chalkley et al.   MOLECULAR & CELLULAR PROTEOMICS

Application of electron transfer dissociation (ETD) for the analysis of posttranslational modifications

(2008) Julia Wiesner et al.   PROTEOMICS

GlycoMiner: a new software tool to elucidate glycopeptide composition

(2008) Oliver Ozohanics et al.   RAPID COMMUNICATIONS IN MASS SPECTROMETRY

COMPLEXITIES AND ALGORITHMS FOR GLYCAN SEQUENCING USING TANDEM MASS SPECTROMETRY

(2008) BAOZHEN SHAN et al.   Journal of Bioinformatics and Computational Biology