Evolutionary analysis and interaction prediction for protein-protein interaction network in geometric space

Evolutionary Model Selection and Parameter Estimation for Protein-Protein Interaction Network Based on Differential Evolution Algorithm

(2015) Lei Huang et al.   IEEE-ACM Transactions on Computational Biology and Bioinformatics

Revealing Missing Parts of the Interactome via Link Prediction

(2014) Yuriy Hulovatyy et al.   PLoS One

Minimum curvilinearity to enhance topological prediction of protein interactions by network embedding

(2013) Carlo Vittorio Cannistraci et al.   BIOINFORMATICS

The Evolutionary Dynamics of Protein-Protein Interaction Networks Inferred from the Reconstruction of Ancient Networks

(2013) Yuliang Jin et al.   PLoS One

t-LSE: A Novel Robust Geometric Approach for Modeling Protein-Protein Interaction Networks

(2013) Lin Zhu et al.   PLoS One

Simulated Evolution of Protein-Protein Interaction Networks with Realistic Topology

(2012) G. Jack Peterson et al.   PLoS One

Nonlinear dimension reduction and clustering by Minimum Curvilinearity unfold neuropathic pain and tissue embryological classes

(2010) Carlo Vittorio Cannistraci et al.   BIOINFORMATICS

Using manifold embedding for assessing and predicting protein interactions from high-throughput experimental data

(2010) Z.-H. You et al.   BIOINFORMATICS

An improved method for scoring protein-protein interactions using semantic similarity within the Gene Ontology

(2010) Shobhit Jain et al.   BMC BIOINFORMATICS

Structure of Protein Interaction Networks and Their Implications on Drug Design

(2009) Takeshi Hase et al.   PLoS Computational Biology

Geometric De-noising of Protein-Protein Interaction Networks

(2009) Oleksii Kuchaiev et al.   PLoS Computational Biology

Fitting a geometric graph to a protein–protein interaction network

(2008) Desmond J. Higham et al.   BIOINFORMATICS

Human Protein Reference Database--2009 update

(2008) T. S. Keshava Prasad et al.   NUCLEIC ACIDS RESEARCH