The Evolutionary Dynamics of Protein-Protein Interaction Networks Inferred from the Reconstruction of Ancient Networks

Parsimonious reconstruction of network evolution

(2012) Rob Patro et al.   Algorithms for Molecular Biology

A small world of weak ties provides optimal global integration of self-similar modules in functional brain networks

(2012) L. K. Gallos et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Collective behavior in the spatial spreading of obesity

(2012) Lazaros K. Gallos et al.   Scientific Reports

Biological interaction networks are conserved at the module level

(2011) Guy E Zinman et al.   BMC Systems Biology

MINT, the molecular interaction database: 2012 update

(2011) Luana Licata et al.   NUCLEIC ACIDS RESEARCH

The IntAct molecular interaction database in 2012

(2011) S. Kerrien et al.   NUCLEIC ACIDS RESEARCH

Database resources of the National Center for Biotechnology Information

(2011) E. W. Sayers et al.   NUCLEIC ACIDS RESEARCH

Random sequential renormalization of networks: Application to critical trees

(2011) Golnoosh Bizhani et al.   PHYSICAL REVIEW E

Measuring the evolutionary rate of protein-protein interaction

(2011) W. Qian et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Evidence for Network Evolution in an Arabidopsis Interactome Map

(2011) et al.   SCIENCE

Network Archaeology: Uncovering Ancient Networks from Present-Day Interactions

(2011) Saket Navlakha et al.   PLoS Computational Biology

Refining transcriptional regulatory networks using network evolutionary models and gene histories

(2010) Xiuwei Zhang et al.   Algorithms for Molecular Biology

Improving evolutionary models of protein interaction networks

(2010) Todd A. Gibson et al.   BIOINFORMATICS

The STRING database in 2011: functional interaction networks of proteins, globally integrated and scored

(2010) D. Szklarczyk et al.   NUCLEIC ACIDS RESEARCH

Small-World to Fractal Transition in Complex Networks: A Renormalization Group Approach

(2010) Hernán D. Rozenfeld et al.   PHYSICAL REVIEW LETTERS

Modularity map of the network of human cell differentiation

(2010) V. Galvao et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

eggNOG v2.0: extending the evolutionary genealogy of genes with enhanced non-supervised orthologous groups, species and functional annotations

(2009) J. Muller et al.   NUCLEIC ACIDS RESEARCH

Benchmarking yeast two-hybrid systems using the interactions of bacterial motility proteins

(2009) Seesandra Venkatappa Rajagopala et al.   PROTEOMICS

Questioning the Ubiquity of Neofunctionalization

(2009) Todd A. Gibson et al.   PLoS Computational Biology

Two-hybrid technologies in proteomics research

(2008) Bernhard Suter et al.   CURRENT OPINION IN BIOTECHNOLOGY

Challenges and Rewards of Interaction Proteomics

(2008) Shoshana J. Wodak et al.   MOLECULAR & CELLULAR PROTEOMICS

An experimentally derived confidence score for binary protein-protein interactions

(2008) Pascal Braun et al.   NATURE METHODS

Conservation and topology of protein interaction networks under duplication-divergence evolution

(2008) K. Evlampiev et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

The evolutionary dynamics of the Saccharomyces cerevisiae protein interaction network after duplication

(2008) A. Presser et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

High-Quality Binary Protein Interaction Map of the Yeast Interactome Network

(2008) H. Yu et al.   SCIENCE

An in Vivo Map of the Yeast Protein Interactome

(2008) K. Tarassov et al.   SCIENCE