Minimum curvilinearity to enhance topological prediction of protein interactions by network embedding

Pivotal role of the muscle-contraction pathway in cryptorchidism and evidence for genomic connections with cardiomyopathy pathways in RASopathies

(2013) Carlo V Cannistraci et al.   BMC Medical Genomics

From link-prediction in brain connectomes and protein interactomes to the local-community-paradigm in complex networks

(2013) Carlo Vittorio Cannistraci et al.   Scientific Reports

Identification and Predictive Value of Interleukin-6 + Interleukin-10 + and Interleukin-6 − Interleukin-10 + Cytokine Patterns in ST-Elevation Acute Myocardial Infarction

(2012) Enrico Ammirati et al.   CIRCULATION RESEARCH

Stage prediction of embryonic stem cell differentiation from genome-wide expression data

(2011) Lan Zagar et al.   BIOINFORMATICS

Controllability of complex networks

(2011) Yang-Yu Liu et al.   NATURE

Tree preserving embedding

(2011) A. D. Shieh et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Nonlinear dimension reduction and clustering by Minimum Curvilinearity unfold neuropathic pain and tissue embryological classes

(2010) Carlo Vittorio Cannistraci et al.   BIOINFORMATICS

Using manifold embedding for assessing and predicting protein interactions from high-throughput experimental data

(2010) Z.-H. You et al.   BIOINFORMATICS

The STRING database in 2011: functional interaction networks of proteins, globally integrated and scored

(2010) D. Szklarczyk et al.   NUCLEIC ACIDS RESEARCH

Systematic and integrative analysis of large gene lists using DAVID bioinformatics resources

(2009) Da Wei Huang et al.   Nature Protocols

Median-modified Wiener filter provides efficient denoising, preserving spot edge and morphology in 2-DE image processing

(2009) Carlo V. Cannistraci et al.   PROTEOMICS

Geometric De-noising of Protein-Protein Interaction Networks

(2009) Oleksii Kuchaiev et al.   PLoS Computational Biology

Use and misuse of the gene ontology annotations

(2008) Seung Yon Rhee et al.   NATURE REVIEWS GENETICS

Bioinformatics enrichment tools: paths toward the comprehensive functional analysis of large gene lists

(2008) Da Wei Huang et al.   NUCLEIC ACIDS RESEARCH