Genome-wide analysis of DUF221 domain-containing gene family in Oryza species and identification of its salinity stress-responsive members in rice

Assessment of genetic diversity of Saltol QTL among the rice (Oryza sativa L.) genotypes

(2016) Showkat Ahmad Ganie et al.   PHYSIOLOGY AND MOLECULAR BIOLOGY OF PLANTS

Histone chaperones in Arabidopsis and rice: genome-wide identification, phylogeny, architecture and transcriptional regulation

(2015) Amit K Tripathi et al.   BMC PLANT BIOLOGY

Identification and analysis of novel salt responsive candidate gene based SSRs (cgSSRs) from rice (Oryza sativa L.)

(2015) Kutubuddin Ali Molla et al.   BMC PLANT BIOLOGY

Genome-wide survey and expression analysis of the OSCA gene family in rice

(2015) Yunshuang Li et al.   BMC PLANT BIOLOGY

Promoter methylation regulates the abundance of osa-miR393a in contrasting rice genotypes under salinity stress

(2015) Showkat Ahmad Ganie et al.   FUNCTIONAL & INTEGRATIVE GENOMICS

Genome-wide development of novel miRNA-based microsatellite markers of rice (Oryza sativa) for genotyping applications

(2015) Showkat Ahmad Ganie et al.   MOLECULAR BREEDING

Comprehensive Evolutionary and Expression Analysis of FCS-Like Zinc finger Gene Family Yields Insights into Their Origin, Expansion and Divergence

(2015) Muhammed Jamsheer K et al.   PLoS One

Genome-Wide Identification and Expression Profiling Analysis of ZmPIN, ZmPILS, ZmLAX and ZmABCB Auxin Transporter Gene Families in Maize (Zea mays L.) under Various Abiotic Stresses

(2015) Runqing Yue et al.   PLoS One

Genome-wide investigation and expression analysis of Sodium/Calcium exchanger gene family in rice and Arabidopsis

(2015) Anil Kumar Singh et al.   Rice

Global Identification of MicroRNAs and Their Targets in Barley under Salinity Stress

(2015) Pingchuan Deng et al.   PLoS One

DUF221 proteins are a family of osmosensitive calcium-permeable cation channels conserved across eukaryotes

(2014) Congcong Hou et al.   CELL RESEARCH

Comprehensive Expression Analysis of Rice Armadillo Gene Family During Abiotic Stress and Development

(2014) M. Sharma et al.   DNA RESEARCH

X-ray structure of a calcium-activated TMEM16 lipid scramblase

(2014) Janine D. Brunner et al.   NATURE

OSCA1 mediates osmotic-stress-evoked Ca2+ increases vital for osmosensing in Arabidopsis

(2014) Fang Yuan et al.   NATURE

Assessment of genetic diversity in salt-tolerant rice and its wild relatives for ten SSR loci and one allele mining primer of salT gene located on 1st chromosome

(2014) Showkat Ahmad Ganie et al.   PLANT SYSTEMATICS AND EVOLUTION

Protein Domains of Unknown Function Are Essential in Bacteria

(2014) N. F. Goodacre et al.   mBio

Protter: interactive protein feature visualization and integration with experimental proteomic data

(2013) Ulrich Omasits et al.   BIOINFORMATICS

Identification and characterization of salt responsive miRNA-SSR markers in rice (Oryza sativa)

(2013) Tapan Kumar Mondal et al.   GENE

Identification of virulence genes in the crucifer anthracnose fungus Colletotrichum higginsianum by insertional mutagenesis

(2013) Liping Liu et al.   MICROBIAL PATHOGENESIS

MEGA6: Molecular Evolutionary Genetics Analysis Version 6.0

(2013) Koichiro Tamura et al.   MOLECULAR BIOLOGY AND EVOLUTION

miRBase: annotating high confidence microRNAs using deep sequencing data

(2013) Ana Kozomara et al.   NUCLEIC ACIDS RESEARCH

Complexity of the Alternative Splicing Landscape in Plants

(2013) A. S. N. Reddy et al.   PLANT CELL

Genome-wide Analysis of Zinc Transporter Genes of Maize (Zea mays)

(2013) Tapan Kumar Mondal et al.   PLANT MOLECULAR BIOLOGY REPORTER

Multiple-to-Multiple Relationships between MicroRNAs and Target Genes in Gastric Cancer

(2013) Yutaka Hashimoto et al.   PLoS One

Whole-genome sequencing of Oryza brachyantha reveals mechanisms underlying Oryza genome evolution

(2013) Jinfeng Chen et al.   Nature Communications

A vacuolar membrane protein affects drastically the biosynthesis of the ACV tripeptide and the beta-lactam pathway of Penicillium chrysogenum

(2012) Marta Fernández-Aguado et al.   APPLIED MICROBIOLOGY AND BIOTECHNOLOGY

Genome-wide classification and expression analysis of MYB transcription factor families in rice and Arabidopsis

(2012) Amit Katiyar et al.   BMC GENOMICS

Clustered metallothionein genes are co-regulated in rice and ectopic expression of OsMT1e-P confers multiple abiotic stress tolerance in tobacco via ROS scavenging

(2012) Gautam Kumar et al.   BMC PLANT BIOLOGY

Novel miRNAs in the control of arsenite levels in rice

(2012) Qingpo Liu   FUNCTIONAL & INTEGRATIVE GENOMICS

PGDD: a database of gene and genome duplication in plants

(2012) Tae-Ho Lee et al.   NUCLEIC ACIDS RESEARCH

Membrane Topology and Predicted RNA-Binding Function of the ‘Early Responsive to Dehydration (ERD4)’ Plant Protein

(2012) Archana Rai et al.   PLoS One

Genome-wide Comparative Analysis of Annexin Superfamily in Plants

(2012) Sravan Kumar Jami et al.   PLoS One

Bioinformatic Analysis of Epigenetic and MicroRNA Mediated Regulation of Drought Responsive Genes in Rice

(2012) Rafi Shaik et al.   PLoS One

RsfA (YbeB) Proteins Are Conserved Ribosomal Silencing Factors

(2012) Roman Häuser et al.   PLoS Genetics

Proteomic identification of OsCYP2, a rice cyclophilin that confers salt tolerance in rice (Oryza sativa L.) seedlings when overexpressed

(2011) Song-Lin Ruan et al.   BMC PLANT BIOLOGY

Genome-wide analysis of rice and Arabidopsis identifies two glyoxalase genes that are highly expressed in abiotic stresses

(2011) Ananda Mustafiz et al.   FUNCTIONAL & INTEGRATIVE GENOMICS

Effects of abscisic acid on ethylene biosynthesis and perception in Hibiscus rosa-sinensis L. flower development

(2011) Alice Trivellini et al.   JOURNAL OF EXPERIMENTAL BOTANY

Comparative transcriptome analysis of AP2/EREBP gene family under normal and hormone treatments, and under two drought stresses in NILs setup by Aday Selection and IR64

(2011) Akhter Most Sharoni et al.   MOLECULAR GENETICS AND GENOMICS

Phytozome: a comparative platform for green plant genomics

(2011) David M. Goodstein et al.   NUCLEIC ACIDS RESEARCH

The Arabidopsis Information Resource (TAIR): improved gene annotation and new tools

(2011) Philippe Lamesch et al.   NUCLEIC ACIDS RESEARCH

psRNATarget: a plant small RNA target analysis server

(2011) Xinbin Dai et al.   NUCLEIC ACIDS RESEARCH

Coping with Stresses: Roles of Calcium- and Calcium/Calmodulin-Regulated Gene Expression

(2011) Anireddy S.N. Reddy et al.   PLANT CELL

Soil processes affecting crop production in salt-affected soils

(2010) Pichu Rengasamy   FUNCTIONAL PLANT BIOLOGY

Overexpression of OsVP1 and OsNHX1 Increases Tolerance to Drought and Salinity in Rice

(2010) Shiping Liu et al.   JOURNAL OF PLANT BIOLOGY

The STRING database in 2011: functional interaction networks of proteins, globally integrated and scored

(2010) D. Szklarczyk et al.   NUCLEIC ACIDS RESEARCH

Multiple microRNAs modulate p21Cip1/Waf1 expression by directly targeting its 3′ untranslated region

(2010) S Wu et al.   ONCOGENE

Breaking the code: Ca2+sensors in plant signalling

(2009) Thomas A. DeFalco et al.   BIOCHEMICAL JOURNAL

Genome wide expression analysis of CBS domain containing proteins in Arabidopsis thaliana (L.) Heynh and Oryza sativa L. reveals their developmental and stress regulation

(2009) Hemant R Kushwaha et al.   BMC GENOMICS

Gene duplication and evolutionary novelty in plants

(2009) Lex E. Flagel et al.   NEW PHYTOLOGIST

Gene structures and processing of Arabidopsis thaliana HYL1-dependent pri-miRNAs

(2009) Bogna Szarzynska et al.   NUCLEIC ACIDS RESEARCH

Identification and expression profiling analysis of TIFY family genes involved in stress and phytohormone responses in rice

(2009) Haiyan Ye et al.   PLANT MOLECULAR BIOLOGY

Plants with double genomes might have had a better chance to survive the Cretaceous-Tertiary extinction event

(2009) J. A. Fawcett et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

AmiGO: online access to ontology and annotation data

(2008) Seth Carbon et al.   BIOINFORMATICS

Identification of novel and candidate miRNAs in rice by high throughput sequencing

(2008) Ramanjulu Sunkar et al.   BMC PLANT BIOLOGY

Expression Cloning of TMEM16A as a Calcium-Activated Chloride Channel Subunit

(2008) Björn Christian Schroeder et al.   CELL

Expression analysis of the calcineurin B-like gene family in rice (Oryza sativa L.) under environmental stresses

(2008) Zhimin Gu et al.   GENE

Comparative Analysis of the MIR319a MicroRNA Locus in Arabidopsis and Related Brassicaceae

(2008) N. Warthmann et al.   MOLECULAR BIOLOGY AND EVOLUTION

Systematic sequence analysis and identification of tissue-specific or stress-responsive genes of NAC transcription factor family in rice

(2008) Yujie Fang et al.   MOLECULAR GENETICS AND GENOMICS

Shaping the calcium signature

(2008) Martin R. McAinsh et al.   NEW PHYTOLOGIST

A Comprehensive Transcriptional Profiling of the WRKY Gene Family in Rice Under Various Abiotic and Phytohormone Treatments

(2008) Rengasamy Ramamoorthy et al.   PLANT AND CELL PHYSIOLOGY

Quantifying the three main components of salinity tolerance in cereals

(2008) KARTHIKA RAJENDRAN et al.   PLANT CELL AND ENVIRONMENT