Comparative Analysis of Vertebrate Diurnal/Circadian Transcriptomes

The Liver in the Eyes of a Chronobiologist

(2016) Ziv Zwighaft et al.   JOURNAL OF BIOLOGICAL RHYTHMS

Differential Phasing between Circadian Clocks in the Brain and Peripheral Organs in Humans

(2016) Jacob J. Hughey et al.   JOURNAL OF BIOLOGICAL RHYTHMS

Circadian regulation of sunflower heliotropism, floral orientation, and pollinator visits

(2016) Hagop S. Atamian et al.   SCIENCE

Daily Rhythms of the Expression of Key Genes Involved in Steroidogenesis and Gonadal Function in Zebrafish

(2016) Viviana Di Rosa et al.   PLoS One

Daily rhythms of lipid metabolic gene expression in zebra fish liver: Response to light/dark and feeding cycles

(2015) J. F. Paredes et al.   CHRONOBIOLOGY INTERNATIONAL

Molecular components of the circadian clock in mammals

(2015) J. S. Takahashi   DIABETES OBESITY & METABOLISM

Circadian rhythms in glucose and lipid metabolism in nocturnal and diurnal mammals

(2015) Pawan Kumar Jha et al.   MOLECULAR AND CELLULAR ENDOCRINOLOGY

VennDIS: A JavaFX-based Venn and Euler diagram software to generate publication quality figures

(2015) Vladimir Ignatchenko et al.   PROTEOMICS

Integrative Analysis of Circadian Transcriptome and Metabolic Network Reveals the Role of De Novo Purine Synthesis in Circadian Control of Cell Cycle

(2015) Ying Li et al.   PLoS Computational Biology

Circadian Enhancers Coordinate Multiple Phases of Rhythmic Gene Transcription In Vivo

(2014) Bin Fang et al.   CELL

Evaluation of Five Methods for Genome-Wide Circadian Gene Identification

(2014) Gang Wu et al.   JOURNAL OF BIOLOGICAL RHYTHMS

CLOCK-Controlled Polyphonic Regulation of Circadian Rhythms through Canonical and Noncanonical E-Boxes

(2014) H. Yoshitane et al.   MOLECULAR AND CELLULAR BIOLOGY

Ensembl 2015

(2014) Fiona Cunningham et al.   NUCLEIC ACIDS RESEARCH

A circadian gene expression atlas in mammals: Implications for biology and medicine

(2014) Ray Zhang et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

How pervasive are circadian oscillations?

(2014) V.R. Patel et al.   TRENDS IN CELL BIOLOGY

A Genome-Scale Resource for the Functional Characterization of Arabidopsis Transcription Factors

(2014) Jose L. Pruneda-Paz et al.   Cell Reports

Reprogramming of the Circadian Clock by Nutritional Challenge

(2013) Kristin L. Eckel-Mahan et al.   CELL

Genome-wide, whole mount in situ analysis of transcriptional regulators in zebrafish embryos

(2013) Olivier Armant et al.   DEVELOPMENTAL BIOLOGY

The zebrafish reference genome sequence and its relationship to the human genome

(2013) Kerstin Howe et al.   NATURE

Cyclin-dependent kinase inhibitor p20 controls circadian cell-cycle timing

(2013) R. Laranjeiro et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Circadian clocks, rhythmic synaptic plasticity and the sleep-wake cycle in zebrafish

(2013) Idan Elbaz et al.   Frontiers in Neural Circuits

Analysis of a Gene Regulatory Cascade Mediating Circadian Rhythm in Zebrafish

(2013) Ying Li et al.   PLoS Computational Biology

CircadiOmics: integrating circadian genomics, transcriptomics, proteomics and metabolomics

(2012) Vishal R Patel et al.   NATURE METHODS

CircaDB: a database of mammalian circadian gene expression profiles

(2012) Angel Pizarro et al.   NUCLEIC ACIDS RESEARCH

Transcriptional Architecture and Chromatin Landscape of the Core Circadian Clock in Mammals

(2012) N. Koike et al.   SCIENCE

Systematic Identification of Rhythmic Genes Reveals camk1gb as a New Element in the Circadian Clockwork

(2012) Adi Tovin et al.   PLoS Genetics

It's time to swim! Zebrafish and the circadian clock

(2011) Gad Vatine et al.   FEBS LETTERS

Global Profiling of Rice and Poplar Transcriptomes Highlights Key Conserved Circadian-Controlled Pathways and cis-Regulatory Modules

(2011) Sergei A. Filichkin et al.   PLoS One

Genome-Wide and Phase-Specific DNA-Binding Rhythms of BMAL1 Control Circadian Output Functions in Mouse Liver

(2011) Guillaume Rey et al.   PLOS BIOLOGY

Circadian Control of Global Gene Expression Patterns

(2010) Colleen J. Doherty et al.   Annual Review of Genetics

The Mammalian Circadian Timing System: Organization and Coordination of Central and Peripheral Clocks

(2010) Charna Dibner et al.   Annual Review of Physiology

FEEDING ENTRAINMENT OF FOOD-ANTICIPATORY ACTIVITY ANDper1EXPRESSION IN THE BRAIN AND LIVER OF ZEBRAFISH UNDER DIFFERENT LIGHTING AND FEEDING CONDITIONS

(2010) Jose F. López-Olmeda et al.   CHRONOBIOLOGY INTERNATIONAL

JTK_CYCLE: An Efficient Nonparametric Algorithm for Detecting Rhythmic Components in Genome-Scale Data Sets

(2010) Michael E. Hughes et al.   JOURNAL OF BIOLOGICAL RHYTHMS

Noninvasive method for assessing the human circadian clock using hair follicle cells

(2010) M. Akashi et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

FEEDING ENTRAINMENT OF DAILY RHYTHMS OF LOCOMOTOR ACTIVITY AND CLOCK GENE EXPRESSION IN ZEBRAFISH BRAIN

(2009) J. A. Sanchez et al.   CHRONOBIOLOGY INTERNATIONAL

A model of the cell-autonomous mammalian circadian clock

(2009) H. P. Mirsky et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

A Functional Genomics Approach Reveals CHE as a Component of the Arabidopsis Circadian Clock

(2009) J. L. Pruneda-Paz et al.   SCIENCE

Harmonics of Circadian Gene Transcription in Mammals

(2009) Michael E. Hughes et al.   PLoS Genetics

Network Discovery Pipeline Elucidates Conserved Time-of-Day–Specific cis-Regulatory Modules

(2008) Todd P. Michael et al.   PLoS Genetics

A Morning-Specific Phytohormone Gene Expression Program underlying Rhythmic Plant Growth

(2008) Todd P Michael et al.   PLOS BIOLOGY

Analysis of Gene Regulatory Networks in the Mammalian Circadian Rhythm

(2008) Jun Yan et al.   PLoS Computational Biology