Differential Phasing between Circadian Clocks in the Brain and Peripheral Organs in Humans

Near-optimal probabilistic RNA-seq quantification

(2016) Nicolas L Bray et al.   NATURE BIOTECHNOLOGY

ZeitZeiger: supervised learning for high-dimensional data from an oscillatory system

(2016) Jacob J. Hughey et al.   NUCLEIC ACIDS RESEARCH

Shell neurons of the master circadian clock coordinate the phase of tissue clocks throughout the brain and body

(2015) Jennifer A. Evans et al.   BMC BIOLOGY

Fast and Stable Multiple Smoothing Parameter Selection in Smoothing Spline Analysis of Variance Models With Large Samples

(2015) Nathaniel E. Helwig et al.   JOURNAL OF COMPUTATIONAL AND GRAPHICAL STATISTICS

Computational analysis of cell-to-cell heterogeneity in single-cell RNA-sequencing data reveals hidden subpopulations of cells

(2015) Florian Buettner et al.   NATURE BIOTECHNOLOGY

Oscope identifies oscillatory genes in unsynchronized single-cell RNA-seq experiments

(2015) Ning Leng et al.   NATURE METHODS

Robust meta-analysis of gene expression using the elastic net

(2015) Jacob J. Hughey et al.   NUCLEIC ACIDS RESEARCH

Effects of aging on circadian patterns of gene expression in the human prefrontal cortex

(2015) Cho-Yi Chen et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Effects of caffeine on the human circadian clock in vivo and in vitro

(2015) Tina M. Burke et al.   Science Translational Medicine

Misaligned feeding impairs memories

(2015) Dawn H Loh et al.   eLife

Temporal transcriptomics suggest that twin-peaking genes reset the clock

(2015) William G Pembroke et al.   eLife

Loss of circadian clock gene expression is associated with tumor progression in breast cancer

(2014) Cristina Cadenas et al.   CELL CYCLE

Cold and hunger induce diurnality in a nocturnal mammal

(2014) Vincent van der Vinne et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Mistimed sleep disrupts circadian regulation of the human transcriptome

(2014) Simon N. Archer et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

A circadian gene expression atlas in mammals: Implications for biology and medicine

(2014) Ray Zhang et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Blood-Gene Expression Reveals Reduced Circadian Rhythmicity in Individuals Resistant to Sleep Deprivation

(2014) Erna S. Arnardottir et al.   SLEEP

Circadian rhythm reprogramming during lung inflammation

(2014) Jeffrey A. Haspel et al.   Nature Communications

Comparison of RefSeq protein-coding regions in human and vertebrate genomes

(2013) Jessica H Fong et al.   BMC GENOMICS

Entrainment of the Human Circadian Clock to the Natural Light-Dark Cycle

(2013) Kenneth P. Wright et al.   CURRENT BIOLOGY

Circadian patterns of gene expression in the human brain and disruption in major depressive disorder

(2013) J. Z. Li et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Effects of insufficient sleep on circadian rhythmicity and expression amplitude of the human blood transcriptome

(2013) C. S. Moller-Levet et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Muscle insulin sensitivity and glucose metabolism are controlled by the intrinsic muscle clock

(2013) Kenneth A. Dyar et al.   Molecular Metabolism

Central and Peripheral Circadian Clocks in Mammals

(2012) Jennifer A. Mohawk et al.   Annual Review of Neuroscience

Rev-erb  and Rev-erb  coordinately protect the circadian clock and normal metabolic function

(2012) A. Bugge et al.   GENES & DEVELOPMENT

Kruppel-like factor 9 is a circadian transcription factor in human epidermis that controls proliferation of keratinocytes

(2012) F. Sporl et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Intrinsic Regulation of Spatiotemporal Organization within the Suprachiasmatic Nucleus

(2011) Jennifer A. Evans et al.   PLoS One

The Mammalian Circadian Timing System: Organization and Coordination of Central and Peripheral Clocks

(2010) Charna Dibner et al.   Annual Review of Physiology

Exposure to Room Light before Bedtime Suppresses Melatonin Onset and Shortens Melatonin Duration in Humans

(2010) Joshua J. Gooley et al.   JOURNAL OF CLINICAL ENDOCRINOLOGY & METABOLISM

Intrinsically Photosensitive Retinal Ganglion Cells

(2010) Michael Tri Hoang Do et al.   PHYSIOLOGICAL REVIEWS

Noninvasive method for assessing the human circadian clock using hair follicle cells

(2010) M. Akashi et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Temperature as a Universal Resetting Cue for Mammalian Circadian Oscillators

(2010) E. D. Buhr et al.   SCIENCE

Circadian oscillation of nucleotide excision repair in mammalian brain

(2009) Tae-Hong Kang et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Circadian Rhythm Disorders

(2009) Kathryn Reid et al.   SEMINARS IN NEUROLOGY

Harmonics of Circadian Gene Transcription in Mammals

(2009) Michael E. Hughes et al.   PLoS Genetics

Relationships between circadian rhythms and modulation of gene expression by glucocorticoids in skeletal muscle

(2008) Richard R. Almon et al.   AMERICAN JOURNAL OF PHYSIOLOGY-REGULATORY INTEGRATIVE AND COMPARATIVE PHYSIOLOGY

Period gene expression in the diurnal degu (Octodon degus) differs from the nocturnal laboratory rat (Rattus norvegicus)

(2008) Andrew M. Vosko et al.   AMERICAN JOURNAL OF PHYSIOLOGY-REGULATORY INTEGRATIVE AND COMPARATIVE PHYSIOLOGY

Circadian Variations in Rat Liver Gene Expression: Relationships to Drug Actions

(2008) R. R. Almon et al.   JOURNAL OF PHARMACOLOGY AND EXPERIMENTAL THERAPEUTICS

Disruption of the circadian clock within the cardiomyocyte influences myocardial contractile function, metabolism, and gene expression

(2007) Molly S. Bray et al.   AMERICAN JOURNAL OF PHYSIOLOGY-HEART AND CIRCULATORY PHYSIOLOGY

Forebrain oscillators ticking with different clock hands

(2007) Céline A. Feillet et al.   MOLECULAR AND CELLULAR NEUROSCIENCE