Systematic Identification of Rhythmic Genes Reveals camk1gb as a New Element in the Circadian Clockwork

RNA studies under fire

(2012) Erika Check Hayden   NATURE

Regulation of circadian behaviour and metabolism by synthetic REV-ERB agonists

(2012) Laura A. Solt et al.   NATURE

Regulation of circadian behaviour and metabolism by REV-ERB-α and REV-ERB-β

(2012) Han Cho et al.   NATURE

Circadian expression of clock and putative clock-controlled genes in skeletal muscle of the zebrafish

(2011) Ian P. G. Amaral et al.   AMERICAN JOURNAL OF PHYSIOLOGY-REGULATORY INTEGRATIVE AND COMPARATIVE PHYSIOLOGY

It's time to swim! Zebrafish and the circadian clock

(2011) Gad Vatine et al.   FEBS LETTERS

Crx broadly modulates the pineal transcriptome

(2011) Louise Rovsing et al.   JOURNAL OF NEUROCHEMISTRY

Systematic bias in high-throughput sequencing data and its correction by BEADS

(2011) Ming-Sin Cheung et al.   NUCLEIC ACIDS RESEARCH

Detection and Removal of Biases in the Analysis of Next-Generation Sequencing Reads

(2011) Schraga Schwartz et al.   PLoS One

Complex Diel Cycles of Gene Expression in Coral-Algal Symbiosis

(2011) O. Levy et al.   SCIENCE

A Blind Circadian Clock in Cavefish Reveals that Opsins Mediate Peripheral Clock Photoreception

(2011) Nicola Cavallari et al.   PLOS BIOLOGY

Improving RNA-Seq expression estimates by correcting for fragment bias

(2011) Adam Roberts et al.   GENOME BIOLOGY

Circadian Control of Global Gene Expression Patterns

(2010) Colleen J. Doherty et al.   Annual Review of Genetics

The Mammalian Circadian Timing System: Organization and Coordination of Central and Peripheral Clocks

(2010) Charna Dibner et al.   Annual Review of Physiology

MULTIPLE PAR AND E4BP4 bZIP TRANSCRIPTION FACTORS IN ZEBRAFISH: DIVERSE SPATIAL AND TEMPORAL EXPRESSION PATTERNS

(2010) Zohar Ben-Moshe et al.   CHRONOBIOLOGY INTERNATIONAL

Comprehensive comparative analysis of strand-specific RNA sequencing methods

(2010) Joshua Z Levin et al.   NATURE METHODS

Biases in Illumina transcriptome sequencing caused by random hexamer priming

(2010) Kasper D. Hansen et al.   NUCLEIC ACIDS RESEARCH

ZFIN: enhancements and updates to the zebrafish model organism database

(2010) Y. Bradford et al.   NUCLEIC ACIDS RESEARCH

Structural and Functional Evolution of the Pineal Melatonin System in Vertebrates

(2009) Jack Falcón et al.   Annals of the New York Academy of Sciences

A new cis-acting regulatory element driving gene expression in the zebrafish pineal gland

(2009) Shahar Alon et al.   BIOINFORMATICS

TopHat: discovering splice junctions with RNA-Seq

(2009) Cole Trapnell et al.   BIOINFORMATICS

Cytochrome P450 and the Biological Clock in Mammals

(2009) Oren Froy   CURRENT DRUG METABOLISM

Transcriptome analysis of the zebrafish pineal gland

(2009) Reiko Toyama et al.   DEVELOPMENTAL DYNAMICS

Transient Receptor Potential Canonical 5 Channels Activate Ca2+/Calmodulin Kinase I  to Promote Axon Formation in Hippocampal Neurons

(2009) M. A. Davare et al.   JOURNAL OF NEUROSCIENCE

Systematic and integrative analysis of large gene lists using DAVID bioinformatics resources

(2009) Da Wei Huang et al.   Nature Protocols

Pineal projections in the zebrafish (Danio rerio): overlap with retinal and cerebellar projections

(2009) J. Yáñez et al.   NEUROSCIENCE

Light Directs Zebrafish period2 Expression via Conserved D and E Boxes

(2009) Gad Vatine et al.   PLOS BIOLOGY

RNA-seq: An assessment of technical reproducibility and comparison with gene expression arrays

(2008) J. C. Marioni et al.   GENOME RESEARCH

Night/Day Changes in Pineal Expression of >600 Genes

(2008) Michael J. Bailey et al.   JOURNAL OF BIOLOGICAL CHEMISTRY

Deep sequencing-based expression analysis shows major advances in robustness, resolution and inter-lab portability over five microarray platforms

(2008) Peter A. C. 't Hoen et al.   NUCLEIC ACIDS RESEARCH