Integrative Analysis of Circadian Transcriptome and Metabolic Network Reveals the Role of De Novo Purine Synthesis in Circadian Control of Cell Cycle
Published 2015 View Full Article
- Home
- Publications
- Publication Search
- Publication Details
Title
Integrative Analysis of Circadian Transcriptome and Metabolic Network Reveals the Role of De Novo Purine Synthesis in Circadian Control of Cell Cycle
Authors
Keywords
Zebrafish, Circadian rhythms, Circadian oscillators, Purine metabolism, Cell cycle and cell division, Purines, Chronobiology, Larvae
Journal
PLoS Computational Biology
Volume 11, Issue 2, Pages e1004086
Publisher
Public Library of Science (PLoS)
Online
2015-02-26
DOI
10.1371/journal.pcbi.1004086
References
Ask authors/readers for more resources
Related references
Note: Only part of the references are listed.- Robust synchronization of coupled circadian and cell cycle oscillators in single mammalian cells
- (2014) J. Bieler et al. Molecular Systems Biology
- Phase locking and multiple oscillating attractors for the coupled mammalian clock and cell cycle
- (2014) Céline Feillet et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- Rhythmic profiles of cell cycle and circadian clock gene transcripts in mice: a possible association between two periodic systems
- (2013) Y. Weigl et al. JOURNAL OF EXPERIMENTAL BIOLOGY
- Data, information, knowledge and principle: back to metabolism in KEGG
- (2013) Minoru Kanehisa et al. NUCLEIC ACIDS RESEARCH
- Circadian Clock Regulation of the Cell Cycle in the Zebrafish Intestine
- (2013) Elodie Peyric et al. PLoS One
- Cyclin-dependent kinase inhibitor p20 controls circadian cell-cycle timing
- (2013) R. Laranjeiro et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- The Circadian Clock Gates the Intestinal Stem Cell Regenerative State
- (2013) Phillip Karpowicz et al. Cell Reports
- Analysis of a Gene Regulatory Cascade Mediating Circadian Rhythm in Zebrafish
- (2013) Ying Li et al. PLoS Computational Biology
- TopHat2: accurate alignment of transcriptomes in the presence of insertions, deletions and gene fusions
- (2013) Daehwan Kim et al. GENOME BIOLOGY
- Circadian clock disruptions and the risk of cancer
- (2012) Tuuli Lahti et al. ANNALS OF MEDICINE
- Fulfilling the metabolic requirements for cell proliferation
- (2012) Salvador Moncada et al. BIOCHEMICAL JOURNAL
- Light Acts on the Zebrafish Circadian Clock to Suppress Rhythmic Mitosis and Cell Proliferation
- (2012) T. Katherine Tamai et al. JOURNAL OF BIOLOGICAL RHYTHMS
- Differential analysis of gene regulation at transcript resolution with RNA-seq
- (2012) Cole Trapnell et al. NATURE BIOTECHNOLOGY
- Circadian Timing of Injury-Induced Cell Proliferation in Zebrafish
- (2012) Maria Laura Idda et al. PLoS One
- Phosphofructokinase 1 Glycosylation Regulates Cell Growth and Metabolism
- (2012) W. Yi et al. SCIENCE
- Rhythmic Nucleotide Synthesis in the Liver: Temporal Segregation of Metabolites
- (2012) Jean-Michel Fustin et al. Cell Reports
- Entrainment of the Mammalian Cell Cycle by the Circadian Clock: Modeling Two Coupled Cellular Rhythms
- (2012) Claude Gérard et al. PLoS Computational Biology
- Aerobic Glycolysis: Meeting the Metabolic Requirements of Cell Proliferation
- (2011) Sophia Y. Lunt et al. Annual Review of Cell and Developmental Biology
- Driving the Cell Cycle Through Metabolism
- (2011) Ling Cai et al. Annual Review of Cell and Developmental Biology
- Androgen Receptor and Nutrient Signaling Pathways Coordinate the Demand for Increased Amino Acid Transport during Prostate Cancer Progression
- (2011) Q. Wang et al. CANCER RESEARCH
- Cell “circadian” cycle: New role for mammalian core clock genes
- (2011) Laurence Borgs et al. CELL CYCLE
- Mammalian cryptochromes impinge on cell cycle progression in a circadian clock-independent manner
- (2011) Eugin Destici et al. CELL CYCLE
- IMPDHII Protein Inhibits Toll-like Receptor 2-mediated Activation of NF-κB
- (2011) Julie Toubiana et al. JOURNAL OF BIOLOGICAL CHEMISTRY
- Purinergic Signals Regulate Daily S-Phase Cell Activity in the Ciliary Marginal Zone of the Zebrafish Retina
- (2011) Maria Jimena Ricatti et al. JOURNAL OF BIOLOGICAL RHYTHMS
- The circadian molecular clock creates epidermal stem cell heterogeneity
- (2011) Peggy Janich et al. NATURE
- Interactive Tree Of Life v2: online annotation and display of phylogenetic trees made easy
- (2011) I. Letunic et al. NUCLEIC ACIDS RESEARCH
- Genome-Wide and Phase-Specific DNA-Binding Rhythms of BMAL1 Control Circadian Output Functions in Mouse Liver
- (2011) Guillaume Rey et al. PLOS BIOLOGY
- BiGG: a Biochemical Genetic and Genomic knowledgebase of large scale metabolic reconstructions
- (2010) Jan Schellenberger et al. BMC BIOINFORMATICS
- Circadian Cell-Cycle Progression: Cracking Open the Gate
- (2010) Jörg Morf et al. CELL
- Elevated ATPase Activity of KaiC Applies a Circadian Checkpoint on Cell Division in Synechococcus elongatus
- (2010) Guogang Dong et al. CELL
- CRX ChIP-seq reveals the cis-regulatory architecture of mouse photoreceptors
- (2010) J. C. Corbo et al. GENOME RESEARCH
- Circadian Integration of Metabolism and Energetics
- (2010) J. Bass et al. SCIENCE
- Circadian Gating of the Cell Cycle Revealed in Single Cyanobacterial Cells
- (2010) Q. Yang et al. SCIENCE
- Zebrafish mutations in gart and paics identify crucial roles for de novo purine synthesis in vertebrate pigmentation and ocular development
- (2009) A. Ng et al. DEVELOPMENT
- Identification of IMPDH2 as a tumor-associated antigen in colorectal cancer using immunoproteomics analysis
- (2009) Yujun He et al. INTERNATIONAL JOURNAL OF COLORECTAL DISEASE
- An inosine 5′-monophosphate dehydrogenase 2 single-nucleotide polymorphism impairs the effect of mycophenolic acid
- (2009) W Winnicki et al. PHARMACOGENOMICS JOURNAL
- Temporal self-organization of the cyclin/Cdk network driving the mammalian cell cycle
- (2009) C. Gerard et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- Ultrafast and memory-efficient alignment of short DNA sequences to the human genome
- (2009) Ben Langmead et al. GENOME BIOLOGY
- CLOCK Is Required for Maintaining the Circadian Rhythms of Opsin mRNA Expression in Photoreceptor Cells
- (2008) Ping Li et al. JOURNAL OF BIOLOGICAL CHEMISTRY
- Haematopoietic stem cell release is regulated by circadian oscillations
- (2008) Simón Méndez-Ferrer et al. NATURE
- Leber congenital amaurosis: Genes, proteins and disease mechanisms
- (2008) Anneke I. den Hollander et al. PROGRESS IN RETINAL AND EYE RESEARCH
- Reversible Compartmentalization of de Novo Purine Biosynthetic Complexes in Living Cells
- (2008) S. An et al. SCIENCE
Discover Peeref hubs
Discuss science. Find collaborators. Network.
Join a conversationBecome a Peeref-certified reviewer
The Peeref Institute provides free reviewer training that teaches the core competencies of the academic peer review process.
Get Started