Targeted and Untargeted Approaches Unravel Novel Candidate Genes and Diagnostic SNPs for Quantitative Resistance of the Potato (Solanum tuberosum L.) to Phytophthora infestans Causing the Late Blight Disease

Transcription factorStWRKY1regulates phenylpropanoid metabolites conferring late blight resistance in potato

(2015) Kalenahalli N. Yogendra et al.   JOURNAL OF EXPERIMENTAL BOTANY

Characterisation of the late blight resistance in potato differential MaR9 reveals a qualitative resistance gene, R9a, residing in a cluster of Tm-2 2 homologs on chromosome IX

(2015) Kwang-Ryong Jo et al.   THEORETICAL AND APPLIED GENETICS

Selection and validation of potato candidate genes for maturity corrected resistance to Phytophthora infestans based on differential expression combined with SNP association and linkage mapping

(2015) Meki S. Muktar et al.   Frontiers in Genetics

Comparative metabolomics and transcriptomics of plant response to Tomato yellow leaf curl virus infection in resistant and susceptible tomato cultivars

(2014) Dagan Sade et al.   Metabolomics

Phenotypic Stability and Genome-Wide Association Study of Late Blight Resistance in Potato Genotypes Adapted to the Tropical Highlands

(2014) Hannele Lindqvist-Kreuze et al.   PHYTOPATHOLOGY

Investigation of terpene diversification across multiple sequenced plant genomes

(2014) Alexander M. Boutanaev et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Identification of elite potato genotypes possessing multiple disease resistance genes through molecular approaches

(2014) Reena Sharma et al.   SCIENTIA HORTICULTURAE

The Ph-3 gene from Solanum pimpinellifolium encodes CC-NBS-LRR protein conferring resistance to Phytophthora infestans

(2014) Chunzhi Zhang et al.   THEORETICAL AND APPLIED GENETICS

Transcript elongation factors: shaping transcriptomes after transcript initiation

(2014) Mieke Van Lijsebettens et al.   TRENDS IN PLANT SCIENCE

Natural Variations and Genome-Wide Association Studies in Crop Plants

(2013) Xuehui Huang et al.   Annual Review of Plant Biology

Novel candidate genes influencing natural variation in potato tuber cold sweetening identified by comparative proteomics and association mapping

(2013) Matthias Fischer et al.   BMC PLANT BIOLOGY

Evidence for the role of wheat eukaryotic translation initiation factor 3 subunit g (TaeIF3g) in abiotic stress tolerance

(2013) Brinderjit Singh et al.   GENE

Rice MtN3/Saliva/SWEET Family Genes and Their Homologs in Cellular Organisms

(2013) Meng Yuan et al.   Molecular Plant

Naturally occurring allele diversity allows potato cultivation in northern latitudes

(2013) Bjorn Kloosterman et al.   NATURE

Population structure and linkage disequilibrium in diploid and tetraploid potato revealed by genome-wide high-density genotyping using the SolCAP SNP array

(2013) Benjamin Stich et al.   PLANT BREEDING

Metabolo-proteomics to discover plant biotic stress resistance genes

(2013) Ajjamada C. Kushalappa et al.   TRENDS IN PLANT SCIENCE

Construction of Reference Chromosome-Scale Pseudomolecules for Potato: Integrating the Potato Genome with Genetic and Physical Maps

(2013) Sanjeev Kumar Sharma et al.   G3-Genes Genomes Genetics

Comparative transcript profiling by SuperSAGE identifies novel candidate genes for controlling potato quantitative resistance to late blight not compromised by late maturity

(2013) Astrid M. Draffehn et al.   Frontiers in Plant Science

TopHat2: accurate alignment of transcriptomes in the presence of insertions, deletions and gene fusions

(2013) Daehwan Kim et al.   GENOME BIOLOGY

TMEM165 Deficiency Causes a Congenital Disorder of Glycosylation

(2012) François Foulquier et al.   AMERICAN JOURNAL OF HUMAN GENETICS

The upregulation of thiamine (vitamin B1) biosynthesis in Arabidopsis thaliana seedlings under salt and osmotic stress conditions is mediated by abscisic acid at the early stages of this stress response

(2012) Maria Rapala-Kozik et al.   BMC PLANT BIOLOGY

Molecular cloning and expression analysis of 12-oxophytodienoate reductase cDNA by wounding in Solanum tuberosum

(2012) Mauricio Díaz et al.   ELECTRONIC JOURNAL OF BIOTECHNOLOGY

Identification and characterization of fructose 1,6-bisphosphate aldolase genes in Arabidopsis reveal a gene family with diverse responses to abiotic stresses

(2012) Wei Lu et al.   GENE

The tomato genome sequence provides insights into fleshy fruit evolution

(2012)   NATURE

A diterpene synthase from the clary sage Salvia sclarea catalyzes the cyclization of geranylgeranyl diphosphate to (8R)-hydroxy-copalyl diphosphate

(2012) Nils Günnewich et al.   PHYTOCHEMISTRY

Chemical and genetic exploration of jasmonate biosynthesis and signaling paths

(2012) Erich Kombrink   PLANTA

The Transcriptome of Compatible and Incompatible Interactions of Potato (Solanum tuberosum) with Phytophthora infestans Revealed by DeepSAGE Analysis

(2012) Gabor Gyetvai et al.   PLoS One

Integration of Two Diploid Potato Linkage Maps with the Potato Genome Sequence

(2012) Kimberly J. Felcher et al.   PLoS One

Conditional QTL underlying resistance to late blight in a diploid potato population

(2012) Jingcai Li et al.   THEORETICAL AND APPLIED GENETICS

Genotype calling in tetraploid species from bi-allelic marker data using mixture models

(2011) Roeland E Voorrips et al.   BMC BIOINFORMATICS

Association genetics in Solanum tuberosum provides new insights into potato tuber bruising and enzymatic tissue discoloration

(2011) Claude Urbany et al.   BMC GENOMICS

Single nucleotide polymorphism discovery in elite north american potato germplasm

(2011) John P Hamilton et al.   BMC GENOMICS

Construction of a potato consensus map and QTL meta-analysis offer new insights into the genetic architecture of late blight resistance and plant maturity traits

(2011) Sarah Danan et al.   BMC PLANT BIOLOGY

Genome sequence and analysis of the tuber crop potato

(2011) Xun Xu et al.   NATURE

A framework for variation discovery and genotyping using next-generation DNA sequencing data

(2011) Mark A DePristo et al.   NATURE GENETICS

Arabidopsis SNARE protein SEC22 is essential for gametophyte development and maintenance of Golgi-stack integrity

(2011) Farid El-Kasmi et al.   PLANT JOURNAL

Mapping of the S. demissum late blight resistance gene R8 to a new locus on chromosome IX

(2011) Kwang-Ryong Jo et al.   THEORETICAL AND APPLIED GENETICS

STRUCTURE HARVESTER: a website and program for visualizing STRUCTURE output and implementing the Evanno method

(2011) Dent A. Earl et al.   Conservation Genetics Resources

Small chloroplast-targeted DnaJ proteins are involved in optimization of photosynthetic reactions in Arabidopsis thaliana

(2010) Kun-Ming Chen et al.   BMC PLANT BIOLOGY

Physical organization of mixed protease inhibitor gene clusters, coordinated expression and association with resistance to late blight at the StKI locus on potato chromosome III

(2010) DAMARIS ACHIENG ODENY et al.   PLANT CELL AND ENVIRONMENT

Molecular characterization of a miraculin-like gene differentially expressed during coffee development and coffee leaf miner infestation

(2010) Jorge Maurício Costa Mondego et al.   PLANTA

Quantitative resistance to late blight from Solanum berthaultii cosegregates with R Pi-ber : insights in stability through isolates and environment

(2010) Gilda Rauscher et al.   THEORETICAL AND APPLIED GENETICS

Population structure and linkage disequilibrium unravelled in tetraploid potato

(2010) Björn B. D’hoop et al.   THEORETICAL AND APPLIED GENETICS

Jasmonates: Structural Requirements for Lipid-Derived Signals Active in Plant Stress Responses and Development

(2009) Claus Wasternack et al.   ACS Chemical Biology

Software engineering the mixed model for genome-wide association studies on large samples

(2009) Z. Zhang et al.   BRIEFINGS IN BIOINFORMATICS

Single Nucleotide Polymorphisms in the Allene Oxide Synthase 2 Gene Are Associated With Field Resistance to Late Blight in Populations of Tetraploid Potato Cultivars

(2009) K. Pajerowska-Mukhtar et al.   GENETICS

Mapping and Cloning of Late Blight Resistance Genes fromSolanum venturiiUsing an Interspecific Candidate Gene Approach

(2009) Mathieu A. Pel et al.   MOLECULAR PLANT-MICROBE INTERACTIONS

Rpi-vnt1.1, aTm-22Homolog fromSolanum venturii, Confers Resistance to Potato Late Blight

(2009) Simon J. Foster et al.   MOLECULAR PLANT-MICROBE INTERACTIONS

Exploiting Knowledge ofR/AvrGenes to Rapidly Clone a New LZ-NBS-LRR Family of Late Blight Resistance Genes from Potato Linkage Group IV

(2009) Anoma A. Lokossou et al.   MOLECULAR PLANT-MICROBE INTERACTIONS

Plastocyanin Transit Peptide Interacts withPotato virus XCoat Protein, While Silencing of Plastocyanin Reduces Coat Protein Accumulation in Chloroplasts and Symptom Severity in Host Plants

(2009) Y. Qiao et al.   MOLECULAR PLANT-MICROBE INTERACTIONS

A Polypyrimidine Tract Binding Protein, Pumpkin RBP50, Forms the Basis of a Phloem-Mobile Ribonucleoprotein Complex

(2009) B.-K. Ham et al.   PLANT CELL

Normalization of full-length enriched cDNA

(2008) Ekaterina A. Bogdanova et al.   Molecular BioSystems

Phytophthora infestans: the plant (and R gene) destroyer

(2008) WILLIAM FRY   MOLECULAR PLANT PATHOLOGY

Natural variation of potato allene oxide synthase 2 causes differential levels of jasmonates and pathogen resistance in Arabidopsis

(2008) Karolina M. Pajerowska-Mukhtar et al.   PLANTA

The structure of “defective in induced resistance” protein ofArabidopsis thaliana, DIR1, reveals a new type of lipid transfer protein

(2008) Marie-Bernard Lascombe et al.   PROTEIN SCIENCE

Natural DNA variation at candidate loci is associated with potato chip color, tuber starch content, yield and starch yield

(2008) Li Li et al.   THEORETICAL AND APPLIED GENETICS

Status and Prospects of Association Mapping in Plants

(2008) Chengsong Zhu et al.   Plant Genome