Effects of Elevated Tropospheric Ozone Concentration on the Bacterial Community in the Phyllosphere and Rhizoplane of Rice

Divergent responses of methanogenic archaeal communities in two rice cultivars to elevated ground-level O 3

(2016) Jianwei Zhang et al.   ENVIRONMENTAL POLLUTION

Physiological and genotype-specific factors associated with grain quality changes in rice exposed to high ozone

(2016) Liquan Jing et al.   ENVIRONMENTAL POLLUTION

Metabolomics in the Rhizosphere: Tapping into Belowground Chemical Communication

(2016) Nicole M. van Dam et al.   TRENDS IN PLANT SCIENCE

Application of ethylene diurea (EDU) in assessing the response of a tropical soybean cultivar to ambient O3: Nitrogen metabolism, antioxidants, reproductive development and yield

(2015) Richa Rai et al.   ECOTOXICOLOGY AND ENVIRONMENTAL SAFETY

Breeding of ozone resistant rice: Relevance, approaches and challenges

(2015) Michael Frei   ENVIRONMENTAL POLLUTION

Ectomycorrhizal colonization and growth of the hybrid larch F 1 under elevated CO 2 and O 3

(2015) Xiaona Wang et al.   ENVIRONMENTAL POLLUTION

The contrasting responses of soil microorganisms in two rice cultivars to elevated ground-level ozone

(2015) Youzhi Feng et al.   ENVIRONMENTAL POLLUTION

The Hidden World within Plants: Ecological and Evolutionary Considerations for Defining Functioning of Microbial Endophytes

(2015) Pablo R. Hardoim et al.   MICROBIOLOGY AND MOLECULAR BIOLOGY REVIEWS

KEGG as a reference resource for gene and protein annotation

(2015) Minoru Kanehisa et al.   NUCLEIC ACIDS RESEARCH

Ectopic phytocystatin expression increases nodule numbers and influences the responses of soybean (Glycine max) to nitrogen deficiency

(2015) Marian D. Quain et al.   PHYTOCHEMISTRY

A Novel Gene,OZONE-RESPONSIVE APOPLASTIC PROTEIN1, Enhances Cell Death in Ozone Stress in Rice

(2015) Yoshiaki Ueda et al.   PLANT PHYSIOLOGY

Structure, variation, and assembly of the root-associated microbiomes of rice

(2015) Joseph Edwards et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Reduced dependence of rhizosphere microbiome on plant-derived carbon in 32-year long-term inorganic and organic fertilized soils

(2015) Chao Ai et al.   SOIL BIOLOGY & BIOCHEMISTRY

Pivotal roles of phyllosphere microorganisms at the interface between plant functioning and atmospheric trace gas dynamics

(2015) Françoise Bringel et al.   Frontiers in Microbiology

Response of phyllosphere bacterial communities to elevated CO2 during rice growing season

(2014) Gaidi Ren et al.   APPLIED MICROBIOLOGY AND BIOTECHNOLOGY

Pyramiding of ozone tolerance QTLs OzT8 and OzT9 confers improved tolerance to season-long ozone exposure in rice

(2014) Yunxia Wang et al.   ENVIRONMENTAL AND EXPERIMENTAL BOTANY

Evidence of widespread ozone-induced visible injury on plants in Beijing, China

(2014) Zhaozhong Feng et al.   ENVIRONMENTAL POLLUTION

Large-scale protein analysis of European beech trees following four vegetation periods of twice ambient ozone exposure

(2014) René Kerner et al.   Journal of Proteomics

Plant signalling in acute ozone exposure

(2014) JULIA P. VAINONEN et al.   PLANT CELL AND ENVIRONMENT

Ecological Succession and Stochastic Variation in the Assembly of Arabidopsis thaliana Phyllosphere Communities

(2014) L. Maignien et al.   mBio

Analysis of plant microbe interactions in the era of next generation sequencing technologies

(2014) Claudia Knief   Frontiers in Plant Science

Structure and Functions of the Bacterial Microbiota of Plants

(2013) Davide Bulgarelli et al.   Annual Review of Plant Biology

Development of a Dual-Index Sequencing Strategy and Curation Pipeline for Analyzing Amplicon Sequence Data on the MiSeq Illumina Sequencing Platform

(2013) James J. Kozich et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Mycorrhizal status of an ozone-sensitive poplar clone treated with the antiozonant ethylene diurea

(2013) Marina Katanić et al.   EUROPEAN JOURNAL OF FOREST RESEARCH

Volatile Organic Compound Mediated Interactions at the Plant-Microbe Interface

(2013) Robert R. Junker et al.   JOURNAL OF CHEMICAL ECOLOGY

Predictive functional profiling of microbial communities using 16S rRNA marker gene sequences

(2013) Morgan G I Langille et al.   NATURE BIOTECHNOLOGY

The molecular mechanisms and physiological consequences of oxidative stress: lessons from a model bacterium

(2013) James A. Imlay   NATURE REVIEWS MICROBIOLOGY

Sensitivity of plants to changing atmospheric CO2concentration: from the geological past to the next century

(2013) Peter J. Franks et al.   NEW PHYTOLOGIST

Ribosomal Database Project: data and tools for high throughput rRNA analysis

(2013) James R. Cole et al.   NUCLEIC ACIDS RESEARCH

Ascorbate metabolism in rice genotypes differing in zinc efficiency

(2013) Stefanie Höller et al.   PLANTA

Bacterial Communities Associated with the Leaves and the Roots of Arabidopsis thaliana

(2013) Natacha Bodenhausen et al.   PLoS One

Diversity and heritability of the maize rhizosphere microbiome under field conditions

(2013) J. A. Peiffer et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Autotrophic Microbe Metagenomes and Metabolic Pathways Differentiate Adjacent Red Sea Brine Pools

(2013) Yong Wang et al.   Scientific Reports

Elevated ground-level O3 negatively influences paddy methanogenic archaeal community

(2013) Youzhi Feng et al.   Scientific Reports

Multiple control levels of root system remodeling in arbuscular mycorrhizal symbiosis

(2013) Caroline Gutjahr et al.   Frontiers in Plant Science

The Effects of Tropospheric Ozone on Net Primary Productivity and Implications for Climate Change

(2012) Elizabeth A. Ainsworth et al.   Annual Review of Plant Biology

Domestic versus international contributions on 2050 ozone air quality: How much is convertible by regional control?

(2012) Hang Lei et al.   ATMOSPHERIC ENVIRONMENT

Length and GC-biases during sequencing library amplification: A comparison of various polymerase-buffer systems with ancient and modern DNA sequencing libraries

(2012) Jesse Dabney et al.   BIOTECHNIQUES

PANDAseq: paired-end assembler for illumina sequences

(2012) Andre P Masella et al.   BMC BIOINFORMATICS

Revealing structure and assembly cues for Arabidopsis root-inhabiting bacterial microbiota

(2012) Davide Bulgarelli et al.   NATURE

Microbial life in the phyllosphere

(2012) Julia A. Vorholt   NATURE REVIEWS MICROBIOLOGY

TaxMan: a server to trim rRNA reference databases and inspect taxonomic coverage

(2012) B. W. Brandt et al.   NUCLEIC ACIDS RESEARCH

The SILVA ribosomal RNA gene database project: improved data processing and web-based tools

(2012) Christian Quast et al.   NUCLEIC ACIDS RESEARCH

Protection of Arabidopsis thaliana against Leaf-Pathogenic Pseudomonas syringae by Sphingomonas Strains in a Controlled Model System

(2011) Gerd Innerebner et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

UCHIME improves sensitivity and speed of chimera detection

(2011) Robert C. Edgar et al.   BIOINFORMATICS

Metaproteogenomic analysis of microbial communities in the phyllosphere and rhizosphere of rice

(2011) Claudia Knief et al.   ISME Journal

Arbuscular mycorrhizal fungi alter the response of growth and nutrient uptake of snap bean (Phaseolus vulgaris L.) to O3

(2011) Shuguang Wang et al.   JOURNAL OF ENVIRONMENTAL SCIENCES

The OzT8 locus in rice protects leaf carbon assimilation rate and photosynthetic capacity under ozone stress

(2011) CHARLES P. CHEN et al.   PLANT CELL AND ENVIRONMENT

Global food demand and the sustainable intensification of agriculture

(2011) D. Tilman et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Mechanisms of ozone tolerance in rice: characterization of two QTLs affecting leaf bronzing by gene expression profiling and biochemical analyses

(2010) Michael Frei et al.   JOURNAL OF EXPERIMENTAL BOTANY

Role of OsNPR1 in rice defense program as revealed by genome-wide expression analysis

(2010) Shoji Sugano et al.   PLANT MOLECULAR BIOLOGY

Shifting carbon flow from roots into associated microbial communities in response to elevated atmospheric CO2

(2010) B. Drigo et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Galaxy: a comprehensive approach for supporting accessible, reproducible, and transparent computational research in the life sciences

(2010) Jeremy Goecks et al.   GENOME BIOLOGY

Introducing mothur: Open-Source, Platform-Independent, Community-Supported Software for Describing and Comparing Microbial Communities

(2009) P. D. Schloss et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

edgeR: a Bioconductor package for differential expression analysis of digital gene expression data

(2009) M. D. Robinson et al.   BIOINFORMATICS

Variovorax ginsengisoli sp. nov., a denitrifying bacterium isolated from soil of a ginseng field

(2009) W.-T. Im et al.   INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY

Glomus intraradicesinduces changes in root system architecture of rice independently of common symbiosis signaling

(2009) Caroline Gutjahr et al.   NEW PHYTOLOGIST

Ethylene and salicylic acid control glutathione biosynthesis in ozone-exposedArabidopsis thaliana

(2009) Seiji Yoshida et al.   PHYSIOLOGIA PLANTARUM

Community proteogenomics reveals insights into the physiology of phyllosphere bacteria

(2009) N. Delmotte et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Cultivation-Independent Characterization of Methylobacterium Populations in the Plant Phyllosphere by Automated Ribosomal Intergenic Spacer Analysis

(2008) C. Knief et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Evaluating different approaches that test whether microbial communities have the same structure

(2008) Patrick D Schloss   ISME Journal

Genotypic variation in tolerance to elevated ozone in rice: dissection of distinct genetic factors linked to tolerance mechanisms

(2008) Michael Frei et al.   JOURNAL OF EXPERIMENTAL BOTANY

Future prediction of surface ozone over east Asia using Models-3 Community Multiscale Air Quality Modeling System and Regional Emission Inventory in Asia

(2008) Kazuyo Yamaji et al.   JOURNAL OF GEOPHYSICAL RESEARCH