TaxMan: a server to trim rRNA reference databases and inspect taxonomic coverage
Published 2012 View Full Article
- Home
- Publications
- Publication Search
- Publication Details
Title
TaxMan: a server to trim rRNA reference databases and inspect taxonomic coverage
Authors
Keywords
-
Journal
NUCLEIC ACIDS RESEARCH
Volume 40, Issue W1, Pages W82-W87
Publisher
Oxford University Press (OUP)
Online
2012-05-23
DOI
10.1093/nar/gks418
References
Ask authors/readers for more resources
Related references
Note: Only part of the references are listed.- A Core Human Microbiome as Viewed through 16S rRNA Sequence Clusters
- (2012) Susan M. Huse et al. PLoS One
- Bacterial Communities in Women with Bacterial Vaginosis: High Resolution Phylogenetic Analyses Reveal Relationships of Microbiota to Clinical Criteria
- (2012) Sujatha Srinivasan et al. PLoS One
- PrimerProspector: de novo design and taxonomic analysis of barcoded polymerase chain reaction primers
- (2011) William A. Walters et al. BIOINFORMATICS
- UCHIME improves sensitivity and speed of chimera detection
- (2011) Robert C. Edgar et al. BIOINFORMATICS
- Exploring the oral microbiota of children at various developmental stages of their dentition in the relation to their oral health
- (2011) Wim Crielaard et al. BMC Medical Genomics
- CORE: A Phylogenetically-Curated 16S rDNA Database of the Core Oral Microbiome
- (2011) Ann L. Griffen et al. PLoS One
- Reducing the Effects of PCR Amplification and Sequencing Artifacts on 16S rRNA-Based Studies
- (2011) Patrick D. Schloss et al. PLoS One
- The under-recognized dominance of Verrucomicrobia in soil bacterial communities
- (2011) Gaddy T. Bergmann et al. SOIL BIOLOGY & BIOCHEMISTRY
- Search and clustering orders of magnitude faster than BLAST
- (2010) Robert C. Edgar BIOINFORMATICS
- Vaginal microbiome of reproductive-age women
- (2010) J. Ravel et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- The Human Oral Microbiome Database: a web accessible resource for investigating oral microbe taxonomic and genomic information
- (2010) T. Chen et al. Database-The Journal of Biological Databases and Curation
- The Effects of Alignment Quality, Distance Calculation Method, Sequence Filtering, and Region on the Analysis of 16S rRNA Gene-Based Studies
- (2010) Patrick D. Schloss PLoS Computational Biology
- Comparison of Species Richness Estimates Obtained Using Nearly Complete Fragments and Simulated Pyrosequencing-Generated Fragments in 16S rRNA Gene-Based Environmental Surveys
- (2009) N. Youssef et al. APPLIED AND ENVIRONMENTAL MICROBIOLOGY
- Metagenomic Pyrosequencing and Microbial Identification
- (2009) J. F. Petrosino et al. CLINICAL CHEMISTRY
- The NIH Human Microbiome Project
- (2009) et al. GENOME RESEARCH
- Exploring Microbial Diversity and Taxonomy Using SSU rRNA Hypervariable Tag Sequencing
- (2008) Susan M. Huse et al. PLoS Genetics
Publish scientific posters with Peeref
Peeref publishes scientific posters from all research disciplines. Our Diamond Open Access policy means free access to content and no publication fees for authors.
Learn MoreAdd your recorded webinar
Do you already have a recorded webinar? Grow your audience and get more views by easily listing your recording on Peeref.
Upload Now