A Conserved MicroRNA Regulatory Circuit Is Differentially Controlled during Limb/Appendage Regeneration

Mature and Juvenile Tissue Models of Regeneration in Small Fish Species

(2016) Nozomi Yoshinari et al.   BIOLOGICAL BULLETIN

Dynamic microRNA-101a and Fosab expression controls zebrafish heart regeneration

(2015) M. Beauchemin et al.   DEVELOPMENT

Zebrafishfoxc1aPlays a Crucial Role in Early Somitogenesis by Restricting the Expression ofaldh1a2Directly

(2015) Jingyun Li et al.   JOURNAL OF BIOLOGICAL CHEMISTRY

ERBB2 triggers mammalian heart regeneration by promoting cardiomyocyte dedifferentiation and proliferation

(2015) Gabriele D’Uva et al.   NATURE CELL BIOLOGY

Dynamics of zebrafish fin regeneration using a pulsed SILAC approach

(2015) Hendrik Nolte et al.   PROTEOMICS

Trimmomatic: a flexible trimmer for Illumina sequence data

(2014) Anthony M. Bolger et al.   BIOINFORMATICS

Keeping at Arm’s Length during Regeneration

(2014) Valerie A. Tornini et al.   DEVELOPMENTAL CELL

STRING v10: protein–protein interaction networks, integrated over the tree of life

(2014) Damian Szklarczyk et al.   NUCLEIC ACIDS RESEARCH

Choline kinase-alpha by regulating cell aggressiveness and drug sensitivity is a potential druggable target for ovarian cancer

(2013) A Granata et al.   BRITISH JOURNAL OF CANCER

miRNAs: Small Genes with Big Potential in Metazoan Phylogenetics

(2013) James E. Tarver et al.   MOLECULAR BIOLOGY AND EVOLUTION

The zebrafish reference genome sequence and its relationship to the human genome

(2013) Kerstin Howe et al.   NATURE

De novo transcript sequence reconstruction from RNA-seq using the Trinity platform for reference generation and analysis

(2013) Brian J Haas et al.   Nature Protocols

miRBase: annotating high confidence microRNAs using deep sequencing data

(2013) Ana Kozomara et al.   NUCLEIC ACIDS RESEARCH

Ensembl 2014

(2013) Paul Flicek et al.   NUCLEIC ACIDS RESEARCH

Focal DNA Copy Number Changes in Neuroblastoma Target MYCN Regulated Genes

(2013) Candy Kumps et al.   PLoS One

miR-21 Promotes Fibrogenic Epithelial-to-Mesenchymal Transition of Epicardial Mesothelial Cells Involving Programmed Cell Death 4 and Sprouty-1

(2013) Hasse Brønnum et al.   PLoS One

tRNA-derived microRNA modulates proliferation and the DNA damage response and is down-regulated in B cell lymphoma

(2013) Roy L. Maute et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

The zebrafish as a model for complex tissue regeneration

(2013) Matthew Gemberling et al.   TRENDS IN GENETICS

Comparative RNA-seq Analysis in the Unsequenced Axolotl: The Oncogene Burst Highlights Early Gene Expression in the Blastema

(2013) Ron Stewart et al.   PLoS Computational Biology

Regulation of zebrafish heart regeneration by miR-133

(2012) Viravuth P. Yin et al.   DEVELOPMENTAL BIOLOGY

Segmental Assembly of Fibronectin Matrix Requiresrap1bandintegrin α5

(2012) Simone Lackner et al.   DEVELOPMENTAL DYNAMICS

Birth and expression evolution of mammalian microRNA genes

(2012) J. Meunier et al.   GENOME RESEARCH

An alternative mode of microRNA target recognition

(2012) Sung Wook Chi et al.   NATURE STRUCTURAL & MOLECULAR BIOLOGY

Deep annotation of mouse iso-miR and iso-moR variation

(2012) Hongjun Zhou et al.   NUCLEIC ACIDS RESEARCH

Suppression of Rap1 Impairs Cardiac Myofibrils and Conduction System in Zebrafish

(2012) Wei Dong et al.   PLoS One

Full regeneration of the tribasal Polypterus fin

(2012) R. Cuervo et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

RSEM: accurate transcript quantification from RNA-Seq data with or without a reference genome

(2011) Bo Li et al.   BMC BIOINFORMATICS

The Cellular Basis for Animal Regeneration

(2011) Elly M. Tanaka et al.   DEVELOPMENTAL CELL

Gene expression profile of the regeneration epithelium during axolotl limb regeneration

(2011) Leah J. Campbell et al.   DEVELOPMENTAL DYNAMICS

IGF signaling between blastema and wound epidermis is required for fin regeneration

(2010) F. Chablais et al.   DEVELOPMENT

Axon growth and guidance genes identify nascent, immature, and mature olfactory sensory neurons

(2010) Jeremy C. McIntyre et al.   JOURNAL OF NEUROSCIENCE RESEARCH

Advances in understanding tissue regenerative capacity and mechanisms in animals

(2010) Kenneth D. Poss   NATURE REVIEWS GENETICS

Human tRNA-derived small RNAs in the global regulation of RNA silencing

(2010) D. Haussecker et al.   RNA

edgeR: a Bioconductor package for differential expression analysis of digital gene expression data

(2009) M. D. Robinson et al.   BIOINFORMATICS

GOrilla: a tool for discovery and visualization of enriched GO terms in ranked gene lists

(2009) Eran Eden et al.   BMC BIOINFORMATICS

Microarray and cDNA sequence analysis of transcription during nerve-dependent limb regeneration

(2009) James R Monaghan et al.   BMC BIOLOGY

The deep evolution of metazoan microRNAs

(2009) Benjamin M. Wheeler et al.   EVOLUTION & DEVELOPMENT

Comparative Expression Profiling Reveals an Essential Role for Raldh2 in Epimorphic Regeneration

(2009) Lijoy K. Mathew et al.   JOURNAL OF BIOLOGICAL CHEMISTRY

Fgf and Sdf-1 Pathways Interact during Zebrafish Fin Regeneration

(2009) Mohamed Bouzaffour et al.   PLoS One

Filtering of deep sequencing data reveals the existence of abundant Dicer-dependent small RNAs derived from tRNAs

(2009) C. Cole et al.   RNA

Ultrafast and memory-efficient alignment of short DNA sequences to the human genome

(2009) Ben Langmead et al.   GENOME BIOLOGY

Gene expression and functional analysis of zebrafish larval fin fold regeneration

(2008) Nozomi Yoshinari et al.   DEVELOPMENTAL BIOLOGY

ErbB2 and ErbB3 regulate amputation-induced proliferation and migration during vertebrate regeneration

(2008) Agustin Rojas-Muñoz et al.   DEVELOPMENTAL BIOLOGY

Fgf-dependent depletion of microRNA-133 promotes appendage regeneration in zebrafish

(2008) V. P. Yin et al.   GENES & DEVELOPMENT

Epigenetic silencing of tumour suppressor gene p15 by its antisense RNA

(2008) Wenqiang Yu et al.   NATURE

Regulation of zebrafish fin regeneration by microRNAs

(2008) E. J. Thatcher et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA