Improved Species-Specific Lysine Acetylation Site Prediction Based on a Large Variety of Features Set

A novel features ranking metric with application to scalable visual and bioinformatics data classification

(2016) Quan Zou et al.   NEUROCOMPUTING

An Improved Protein Structural Classes Prediction Method by Incorporating Both Sequence and Structure Information

(2015) Leyi Wei et al.   IEEE TRANSACTIONS ON NANOBIOSCIENCE

Predicting the subcellular localization of mycobacterial proteins by incorporating the optimal tripeptides into the general form of pseudo amino acid composition

(2015) Pan-Pan Zhu et al.   Molecular BioSystems

Protein remote homology detection by combining Chou’s distance-pair pseudo amino acid composition and principal component analysis

(2015) Bin Liu et al.   MOLECULAR GENETICS AND GENOMICS

Pse-in-One: a web server for generating various modes of pseudo components of DNA, RNA, and protein sequences

(2015) Bin Liu et al.   NUCLEIC ACIDS RESEARCH

Predicting cancerlectins by the optimal g-gap dipeptides

(2015) Hao Lin et al.   Scientific Reports

Analysis of Conformational B-Cell Epitopes in the Antibody-Antigen Complex Using the Depth Function and the Convex Hull

(2015) Wei Zheng et al.   PLoS One

PhosphoSVM: prediction of phosphorylation sites by integrating various protein sequence attributes with a support vector machine

(2014) Yongchao Dou et al.   AMINO ACIDS

iNuc-PseKNC: a sequence-based predictor for predicting nucleosome positioning in genomes with pseudo k-tuple nucleotide composition

(2014) Shou-Hui Guo et al.   BIOINFORMATICS

An ensemble method for prediction of conformational B-cell epitopes from antigen sequences

(2014) Wei Zheng et al.   COMPUTATIONAL BIOLOGY AND CHEMISTRY

Identification of bacteriophage virion proteins by the ANOVA feature selection and analysis

(2014) Hui Ding et al.   Molecular BioSystems

iPro54-PseKNC: a sequence-based predictor for identifying sigma-54 promoters in prokaryote with pseudo k-tuple nucleotide composition

(2014) Hao Lin et al.   NUCLEIC ACIDS RESEARCH

LAceP: Lysine Acetylation Site Prediction Using Logistic Regression Classifiers

(2014) Ting Hou et al.   PLoS One

Accurate in silico identification of species-specific acetylation sites by integrating protein sequence-derived and functional features

(2014) Yuan Li et al.   Scientific Reports

iCTX-Type: A Sequence-Based Predictor for Identifying the Types of Conotoxins in Targeting Ion Channels

(2014) Hui Ding et al.   Biomed Research International

hCKSAAP_UbSite: Improved prediction of human ubiquitination sites by exploiting amino acid pattern and properties

(2013) Zhen Chen et al.   BIOCHIMICA ET BIOPHYSICA ACTA-PROTEINS AND PROTEOMICS

Incorporating key position and amino acid residue features to identify general and species-specific Ubiquitin conjugation sites

(2013) Xiang Chen et al.   BIOINFORMATICS

LibD3C: Ensemble classifiers with a clustering and dynamic selection strategy

(2013) Chen Lin et al.   NEUROCOMPUTING

iRSpot-PseDNC: identify recombination spots with pseudo dinucleotide composition

(2013) Wei Chen et al.   NUCLEIC ACIDS RESEARCH

Hierarchical Classification of Protein Folds Using a Novel Ensemble Classifier

(2013) Chen Lin et al.   PLoS One

AcalPred: A Sequence-Based Tool for Discriminating between Acidic and Alkaline Enzymes

(2013) Hao Lin et al.   PLoS One

The prediction of protein structural class using averaged chemical shifts

(2012) Hao Lin et al.   JOURNAL OF BIOMOLECULAR STRUCTURE & DYNAMICS

Identification of mycobacterial membrane proteins and their types using over-represented tripeptide compositions

(2012) Chen Ding et al.   Journal of Proteomics

Systematic analysis of human lysine acetylation proteins and accurate prediction of human lysine acetylation through bi-relative adapted binomial score Bayes feature representation

(2012) Jianlin Shao et al.   Molecular BioSystems

PLMLA: prediction of lysine methylation and lysine acetylation by combining multiple features

(2012) Shao-Ping Shi et al.   Molecular BioSystems

ASEB: a web server for KAT-specific acetylation site prediction

(2012) L. Wang et al.   NUCLEIC ACIDS RESEARCH

Protein N-terminal acetyltransferases in cancer

(2012) T V Kalvik et al.   ONCOGENE

PMeS: Prediction of Methylation Sites Based on Enhanced Feature Encoding Scheme

(2012) Shao-Ping Shi et al.   PLoS One

Position-Specific Analysis and Prediction for Protein Lysine Acetylation Based on Multiple Features

(2012) Sheng-Bao Suo et al.   PLoS One

Prediction of the types of ion channel-targeted conotoxins based on radial basis function network

(2012) Lu-Feng Yuan et al.   TOXICOLOGY IN VITRO

SPINE X: Improving protein secondary structure prediction by multistep learning coupled with prediction of solvent accessible surface area and backbone torsion angles

(2011) Eshel Faraggi et al.   JOURNAL OF COMPUTATIONAL CHEMISTRY

HHblits: lightning-fast iterative protein sequence searching by HMM-HMM alignment

(2011) Michael Remmert et al.   NATURE METHODS

PhosphoSitePlus: a comprehensive resource for investigating the structure and function of experimentally determined post-translational modifications in man and mouse

(2011) P. V. Hornbeck et al.   NUCLEIC ACIDS RESEARCH

Prediction of Ubiquitination Sites by Using the Composition of k-Spaced Amino Acid Pairs

(2011) Zhen Chen et al.   PLoS One

Identify Golgi Protein Types with Modified Mahalanobis Discriminant Algorithm and Pseudo Amino Acid Composition

(2011) Hui Ding et al.   PROTEIN AND PEPTIDE LETTERS

Predicting post-translational lysine acetylation using support vector machines

(2010) F. Gnad et al.   BIOINFORMATICS

CD-HIT Suite: a web server for clustering and comparing biological sequences

(2010) Ying Huang et al.   BIOINFORMATICS

The Tale of Protein Lysine Acetylation in the Cytoplasm

(2010) Karin Sadoul et al.   JOURNAL OF BIOMEDICINE AND BIOTECHNOLOGY

N-Ace: Using solvent accessibility and physicochemical properties to identify protein N-acetylation sites

(2010) Tzong-Yi Lee et al.   JOURNAL OF COMPUTATIONAL CHEMISTRY

Lysine acetylation sites prediction using an ensemble of support vector machine classifiers

(2010) Yan Xu et al.   JOURNAL OF THEORETICAL BIOLOGY

Predicting ion channels and their types by the dipeptide mode of pseudo amino acid composition

(2010) Hao Lin et al.   JOURNAL OF THEORETICAL BIOLOGY

Some remarks on protein attribute prediction and pseudo amino acid composition

(2010) Kuo-Chen Chou   JOURNAL OF THEORETICAL BIOLOGY

PHOSIDA 2011: the posttranslational modification database

(2010) F. Gnad et al.   NUCLEIC ACIDS RESEARCH

CPLA 1.0: an integrated database of protein lysine acetylation

(2010) Zexian Liu et al.   NUCLEIC ACIDS RESEARCH

N-Terminal Acetylation of Cellular Proteins Creates Specific Degradation Signals

(2010) C.-S. Hwang et al.   SCIENCE

Regulation of Cellular Metabolism by Protein Lysine Acetylation

(2010) S. Zhao et al.   SCIENCE

Incorporating structural characteristics for identification of protein methylation sites

(2009) Dray-Ming Shien et al.   JOURNAL OF COMPUTATIONAL CHEMISTRY

Computational Identification of Protein Methylation Sites through Bi-Profile Bayes Feature Extraction

(2009) Jianlin Shao et al.   PLoS One

Proteome-wide prediction of acetylation substrates

(2009) A. Basu et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Prediction of Cell Wall Lytic Enzymes Using Chous Amphiphilic Pseudo Amino Acid Composition

(2009) Hui Ding et al.   PROTEIN AND PEPTIDE LETTERS

Improved Prediction of Lysine Acetylation by Support Vector Machines

(2009) Songling Li et al.   PROTEIN AND PEPTIDE LETTERS

PEPITO: improved discontinuous B-cell epitope prediction using multiple distance thresholds and half sphere exposure

(2008) Michael J. Sweredoski et al.   BIOINFORMATICS

Predicting Subcellular Localization of Mycobacterial Proteins by Using Chous Pseudo Amino Acid Composition

(2008) Hao Lin et al.   PROTEIN AND PEPTIDE LETTERS