Incorporating key position and amino acid residue features to identify general and species-specific Ubiquitin conjugation sites

Prediction of lysine ubiquitination with mRMR feature selection and analysis

(2011) Yudong Cai et al.   AMINO ACIDS

A Proteome-wide, Quantitative Survey of In Vivo Ubiquitylation Sites Reveals Widespread Regulatory Roles

(2011) Sebastian A. Wagner et al.   MOLECULAR & CELLULAR PROTEOMICS

Systematic and Quantitative Assessment of the Ubiquitin-Modified Proteome

(2011) Woong Kim et al.   MOLECULAR CELL

Incorporating Distant Sequence Features and Radial Basis Function Networks to Identify Ubiquitin Conjugation Sites

(2011) Tzong-Yi Lee et al.   PLoS One

Prediction of Ubiquitination Sites by Using the Composition of k-Spaced Amino Acid Pairs

(2011) Zhen Chen et al.   PLoS One

N-Ace: Using solvent accessibility and physicochemical properties to identify protein N-acetylation sites

(2010) Tzong-Yi Lee et al.   JOURNAL OF COMPUTATIONAL CHEMISTRY

Prediction of Tyrosine Sulfation with mRMR Feature Selection and Analysis

(2010) Shen Niu et al.   JOURNAL OF PROTEOME RESEARCH

Musite, a Tool for Global Prediction of General and Kinase-specific Phosphorylation Sites

(2010) Jianjiong Gao et al.   MOLECULAR & CELLULAR PROTEOMICS

Ubiquitylation of an ERAD Substrate Occurs on Multiple Types of Amino Acids

(2010) Yuichiro Shimizu et al.   MOLECULAR CELL

Global analysis of lysine ubiquitination by ubiquitin remnant immunoaffinity profiling

(2010) Guoqiang Xu et al.   NATURE BIOTECHNOLOGY

Identification, analysis, and prediction of protein ubiquitination sites

(2009) Predrag Radivojac et al.   PROTEINS-STRUCTURE FUNCTION AND BIOINFORMATICS

Computational identification of ubiquitylation sites from protein sequences

(2008) Chun-Wei Tung et al.   BMC BIOINFORMATICS

SCUD: Saccharomyces Cerevisiae Ubiquitination Database

(2008) Won-Chul Lee et al.   BMC GENOMICS

Atypical ubiquitin chains: new molecular signals. ‘Protein Modifications: Beyond the Usual Suspects’ Review Series

(2008) Fumiyo Ikeda et al.   EMBO REPORTS

Prediction of integral membrane protein type by collocated hydrophobic amino acid pairs

(2008) Ke Chen et al.   JOURNAL OF COMPUTATIONAL CHEMISTRY