Integrated In Silico Analysis of Pathway Designs for Synthetic Photo-Electro-Autotrophy
Published 2016 View Full Article
- Home
- Publications
- Publication Search
- Publication Details
Title
Integrated In Silico Analysis of Pathway Designs for Synthetic Photo-Electro-Autotrophy
Authors
Keywords
Thermodynamics, Carbon dioxide, Dehydrogenases, Electron donors, Protons, Pyruvate, Engineers, Carbon fixation
Journal
PLoS One
Volume 11, Issue 6, Pages e0157851
Publisher
Public Library of Science (PLoS)
Online
2016-06-24
DOI
10.1371/journal.pone.0157851
References
Ask authors/readers for more resources
Related references
Note: Only part of the references are listed.- Global characterization of in vivo enzyme catalytic rates and their correspondence to in vitrokcatmeasurements
- (2016) Dan Davidi et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- Modulation of spectral properties and pump activity of proteorhodopsins by retinal analogues
- (2015) Srividya Ganapathy et al. BIOCHEMICAL JOURNAL
- Experimental evidence for growth advantage and metabolic shift stimulated by photophosphorylation of proteorhodopsin expressed inEscherichia coliat anaerobic condition
- (2015) Ying Wang et al. BIOTECHNOLOGY AND BIOENGINEERING
- Quantitative analysis of an engineered CO2-fixing Escherichia coli reveals great potential of heterotrophic CO2 fixation
- (2015) Fuyu Gong et al. Biotechnology for Biofuels
- Directed Evolution of Gloeobacter violaceus Rhodopsin Spectral Properties
- (2015) Martin K.M. Engqvist et al. JOURNAL OF MOLECULAR BIOLOGY
- Engineering Escherichia coli for methanol conversion
- (2015) Jonas E.N. Müller et al. METABOLIC ENGINEERING
- Pseudo-transition Analysis Identifies the Key Regulators of Dynamic Metabolic Adaptations from Steady-State Data
- (2015) Luca Gerosa et al. Cell Systems
- Autotrophy at the thermodynamic limit of life: a model for energy conservation in acetogenic bacteria
- (2014) Kai Schuchmann et al. NATURE REVIEWS MICROBIOLOGY
- Quantifying the effects of light intensity on bioproduction and maintenance energy during photosynthetic growth of Rhodobacter sphaeroides
- (2014) Saheed Imam et al. PHOTOSYNTHESIS RESEARCH
- Visual account of protein investment in cellular functions
- (2014) W. Liebermeister et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- Ammonia-oxidizing archaea use the most energy-efficient aerobic pathway for CO2 fixation
- (2014) M. Konneke et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- Constraint-Based Modeling of Carbon Fixation and the Energetics of Electron Transfer in Geobacter metallireducens
- (2014) Adam M. Feist et al. PLoS Computational Biology
- Pathway Thermodynamics Highlights Kinetic Obstacles in Central Metabolism
- (2014) Elad Noor et al. PLoS Computational Biology
- Clostridium acidurici Electron-Bifurcating Formate Dehydrogenase
- (2013) Shuning Wang et al. APPLIED AND ENVIRONMENTAL MICROBIOLOGY
- Structural Insight into Proteorhodopsin Oligomers
- (2013) Katherine M. Stone et al. BIOPHYSICAL JOURNAL
- Carbon dioxide fixation by Calvin-Cycle enzymes improves ethanol yield in yeast
- (2013) Víctor Guadalupe-Medina et al. Biotechnology for Biofuels
- Electrobiocommodities: powering microbial production of fuels and commodity chemicals from carbon dioxide with electricity
- (2013) Derek R Lovley et al. CURRENT OPINION IN BIOTECHNOLOGY
- Biological conversion of carbon dioxide and hydrogen into liquid fuels and industrial chemicals
- (2013) Aaron S Hawkins et al. CURRENT OPINION IN BIOTECHNOLOGY
- Expression of the sub-pathways of the Chloroflexus aurantiacus 3-hydroxypropionate carbon fixation bicycle in E. coli: Toward horizontal transfer of autotrophic growth
- (2013) Matthew d. Mattozzi et al. METABOLIC ENGINEERING
- A reverse glyoxylate shunt to build a non-native route from C4 to C2 in Escherichia coli
- (2013) Samuel E. Mainguet et al. METABOLIC ENGINEERING
- Gene Expression System in Green Sulfur Bacteria by Conjugative Plasmid Transfer
- (2013) Chihiro Azai et al. PLoS One
- Exploiting microbial hyperthermophilicity to produce an industrial chemical, using hydrogen and carbon dioxide
- (2013) M. W. Keller et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- Potential of proton-pumping rhodopsins: engineering photosystems into microorganisms
- (2013) Nico J. Claassens et al. TRENDS IN BIOTECHNOLOGY
- Tuning Promoter Strengths for Improved Synthesis and Function of Electron Conduits in Escherichia coli
- (2013) Cheryl P. Goldbeck et al. ACS Synthetic Biology
- Consistent Estimation of Gibbs Energy Using Component Contributions
- (2013) Elad Noor et al. PLoS Computational Biology
- Thermodynamic constraints shape the structure of carbon fixation pathways
- (2012) Arren Bar-Even et al. BIOCHIMICA ET BIOPHYSICA ACTA-BIOENERGETICS
- Energy conservation via electron bifurcating ferredoxin reduction and proton/Na+ translocating ferredoxin oxidation
- (2012) Wolfgang Buckel et al. BIOCHIMICA ET BIOPHYSICA ACTA-BIOENERGETICS
- Design and analysis of metabolic pathways supporting formatotrophic growth for electricity-dependent cultivation of microbes
- (2012) Arren Bar-Even et al. BIOCHIMICA ET BIOPHYSICA ACTA-BIOENERGETICS
- An integrated open framework for thermodynamics of reactions that combines accuracy and coverage
- (2012) Elad Noor et al. BIOINFORMATICS
- Improving carbon fixation pathways
- (2012) Daniel C Ducat et al. CURRENT OPINION IN CHEMICAL BIOLOGY
- Pathway engineering and synthetic biology using acetogens
- (2012) Bettina Schiel-Bengelsdorf et al. FEBS LETTERS
- BRENDA in 2013: integrated reactions, kinetic data, enzyme function data, improved disease classification: new options and contents in BRENDA
- (2012) Ida Schomburg et al. NUCLEIC ACIDS RESEARCH
- Bioenergetics of photoheterotrophic bacteria in the oceans
- (2012) David L. Kirchman et al. Environmental Microbiology Reports
- Stoichiometric and energetic analyses of non-photosynthetic CO2-fixation pathways to support synthetic biology strategies for production of fuels and chemicals
- (2012) Alan G Fast et al. Current Opinion in Chemical Engineering
- Ecological Aspects of the Distribution of Different Autotrophic CO2Fixation Pathways
- (2011) Ivan A. Berg APPLIED AND ENVIRONMENTAL MICROBIOLOGY
- Metabolic and practical considerations on microbial electrosynthesis
- (2011) Korneel Rabaey et al. CURRENT OPINION IN BIOTECHNOLOGY
- A survey of carbon fixation pathways through a quantitative lens
- (2011) Arren Bar-Even et al. JOURNAL OF EXPERIMENTAL BOTANY
- Computation of metabolic fluxes and efficiencies for biological carbon dioxide fixation
- (2011) Nanette R. Boyle et al. METABOLIC ENGINEERING
- Parts plus pipes: Synthetic biology approaches to metabolic engineering
- (2011) Patrick M. Boyle et al. METABOLIC ENGINEERING
- eQuilibrator--the biochemical thermodynamics calculator
- (2011) A. Flamholz et al. NUCLEIC ACIDS RESEARCH
- Modularity of a carbon-fixing protein organelle
- (2011) W. Bonacci et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- Reconstitution of Gloeobacter Rhodopsin with Echinenone: Role of the 4-Keto Group
- (2010) Sergei P. Balashov et al. BIOCHEMISTRY
- Labeling and Enzyme Studies of the Central Carbon Metabolism in Metallosphaera sedula
- (2010) S. Estelmann et al. JOURNAL OF BACTERIOLOGY
- Global Proteomics Reveal an Atypical Strategy for Carbon/Nitrogen Assimilation by a Cyanobacterium Under Diverse Environmental Perturbations
- (2010) Kimberly M. Wegener et al. MOLECULAR & CELLULAR PROTEOMICS
- What is flux balance analysis?
- (2010) Jeffrey D Orth et al. NATURE BIOTECHNOLOGY
- Autotrophic carbon fixation in archaea
- (2010) Ivan A. Berg et al. NATURE REVIEWS MICROBIOLOGY
- Microbial electrosynthesis — revisiting the electrical route for microbial production
- (2010) Korneel Rabaey et al. NATURE REVIEWS MICROBIOLOGY
- Clostridium ljungdahlii represents a microbial production platform based on syngas
- (2010) M. Kopke et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- Engineering of a synthetic electron conduit in living cells
- (2010) H. M. Jensen et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- Design and analysis of synthetic carbon fixation pathways
- (2010) A. Bar-Even et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- Constraint-Based Model of Shewanella oneidensis MR-1 Metabolism: A Tool for Data Analysis and Hypothesis Generation
- (2010) Grigoriy E. Pinchuk et al. PLoS Computational Biology
- Absolute metabolite concentrations and implied enzyme active site occupancy in Escherichia coli
- (2009) Bryson D Bennett et al. Nature Chemical Biology
- Exploring the inner membrane proteome of Escherichia coli: which proteins are eluding detection and why?
- (2009) Andreas Bernsel et al. TRENDS IN MICROBIOLOGY
- A dicarboxylate/4-hydroxybutyrate autotrophic carbon assimilation cycle in the hyperthermophilic Archaeum Ignicoccus hospitalis
- (2008) H. Huber et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
Publish scientific posters with Peeref
Peeref publishes scientific posters from all research disciplines. Our Diamond Open Access policy means free access to content and no publication fees for authors.
Learn MoreAdd your recorded webinar
Do you already have a recorded webinar? Grow your audience and get more views by easily listing your recording on Peeref.
Upload Now