Constraint-Based Modeling of Carbon Fixation and the Energetics of Electron Transfer in Geobacter metallireducens

Trash to treasure: production of biofuels and commodity chemicals via syngas fermenting microorganisms

(2014) Haythem Latif et al.   CURRENT OPINION IN BIOTECHNOLOGY

Electrobiocommodities: powering microbial production of fuels and commodity chemicals from carbon dioxide with electricity

(2013) Derek R Lovley et al.   CURRENT OPINION IN BIOTECHNOLOGY

Characterizing acetogenic metabolism using a genome-scale metabolic reconstruction of Clostridium ljungdahlii

(2013) Harish Nagarajan et al.   Microbial Cell Factories

Basic and applied uses of genome-scale metabolic network reconstructions of Escherichia coli

(2013) D. McCloskey et al.   Molecular Systems Biology

Outer Cell Surface Components Essential for Fe(III) Oxide Reduction by Geobacter metallireducens

(2012) Jessica A. Smith et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

The genome of Pelobacter carbinolicus reveals surprising metabolic capabilities and physiological features

(2012) Muktak Aklujkar et al.   BMC GENOMICS

Anaerobic Oxidation of Benzene by the Hyperthermophilic Archaeon Ferroglobus placidus

(2011) Dawn E. Holmes et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

TIGER: Toolbox for integrating genome-scale metabolic models, expression data, and transcriptional regulatory networks

(2011) Paul A Jensen et al.   BMC Systems Biology

Genome-scale analysis of anaerobic benzoate and phenol metabolism in the hyperthermophilic archaeon Ferroglobus placidus

(2011) Dawn E Holmes et al.   ISME Journal

Tunable metallic-like conductivity in microbial nanowire networks

(2011) Nikhil S. Malvankar et al.   Nature Nanotechnology

Quantitative prediction of cellular metabolism with constraint-based models: the COBRA Toolbox v2.0

(2011) Jan Schellenberger et al.   Nature Protocols

The MetaCyc database of metabolic pathways and enzymes and the BioCyc collection of pathway/genome databases

(2011) R. Caspi et al.   NUCLEIC ACIDS RESEARCH

Functional integration of a metabolic network model and expression data without arbitrary thresholding

(2010) Paul A. Jensen et al.   BIOINFORMATICS

The genome of Geobacter bemidjiensis, exemplar for the subsurface clade of Geobacter species that predominate in Fe(III)-reducing subsurface environments.

(2010) Muktak Aklujkar et al.   BMC GENOMICS

The biomass objective function

(2010) Adam M Feist et al.   CURRENT OPINION IN MICROBIOLOGY

High-throughput generation, optimization and analysis of genome-scale metabolic models

(2010) Christopher S Henry et al.   NATURE BIOTECHNOLOGY

A protocol for generating a high-quality genome-scale metabolic reconstruction

(2010) Ines Thiele et al.   Nature Protocols

In situ to in silico and back: elucidating the physiology and ecology of Geobacter spp. using genome-scale modelling

(2010) Radhakrishnan Mahadevan et al.   NATURE REVIEWS MICROBIOLOGY

Autotrophic carbon fixation in archaea

(2010) Ivan A. Berg et al.   NATURE REVIEWS MICROBIOLOGY

Direct Exchange of Electrons Within Aggregates of an Evolved Syntrophic Coculture of Anaerobic Bacteria

(2010) Z. M. Summers et al.   SCIENCE

The genome sequence of Geobacter metallireducens: features of metabolism, physiology and regulation common and dissimilar to Geobacter sulfurreducens

(2009) Muktak Aklujkar et al.   BMC MICROBIOLOGY

Genome-scale constraint-based modeling of Geobacter metallireducens

(2009) Jun Sun et al.   BMC Systems Biology

Exoelectrogenic bacteria that power microbial fuel cells

(2009) Bruce E. Logan   NATURE REVIEWS MICROBIOLOGY

Identification and characterization of the tungsten-containing class of benzoyl-coenzyme A reductases

(2009) J. W. Kung et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Purification and Characterization of Active-Site Components of the Putative p-Cresol Methylhydroxylase Membrane Complex from Geobacter metallireducens

(2008) J. Johannes et al.   JOURNAL OF BACTERIOLOGY

Polar lipid fatty acids, LPS-hydroxy fatty acids, and respiratory quinones of three Geobacter strains, and variation with electron acceptor

(2008) D. B. Hedrick et al.   JOURNAL OF INDUSTRIAL MICROBIOLOGY & BIOTECHNOLOGY

Reconstruction of biochemical networks in microorganisms

(2008) Adam M. Feist et al.   NATURE REVIEWS MICROBIOLOGY