Uncovering the Protein Lysine and Arginine Methylation Network in Arabidopsis Chloroplasts

Prediction of lysine post-translational modifications using bioinformatic tools

(2014) Daniel Schwartz   Essays in Biochemistry

Analysis of the Proteome of Saccharomyces cerevisiae for Methylarginine

(2013) Jason K.K. Low et al.   JOURNAL OF PROTEOME RESEARCH

Global proteomic analysis in trypanosomes reveals unique proteins and conserved cellular processes impacted by arginine methylation

(2013) Kaylen Lott et al.   Journal of Proteomics

Mass spectrometry-based identification and characterisation of lysine and arginine methylation in the human proteome

(2013) Michael Bremang et al.   Molecular BioSystems

Calmodulin-Mediated Signal Transduction Pathways in Arabidopsis Are Fine-Tuned by Methylation

(2013) J. Banerjee et al.   PLANT CELL

Protein methylation at the surface and buried deep: thinking outside the histone box

(2013) Steven G. Clarke   TRENDS IN BIOCHEMICAL SCIENCES

A Newly Uncovered Group of Distantly Related Lysine Methyltransferases Preferentially Interact with Molecular Chaperones to Regulate Their Activity

(2013) Philippe Cloutier et al.   PLoS Genetics

Fifty years in the thioredoxin field and a bountiful harvest

(2012) Bob B. Buchanan et al.   BIOCHIMICA ET BIOPHYSICA ACTA-GENERAL SUBJECTS

Human Protein Arginine Methyltransferase 7 (PRMT7) Is a Type III Enzyme Forming ω-NG-Monomethylated Arginine Residues

(2012) Cecilia I. Zurita-Lopez et al.   JOURNAL OF BIOLOGICAL CHEMISTRY

Characterization of Chloroplastic Fructose 1,6-Bisphosphate Aldolases as Lysine-methylated Proteins in Plants

(2012) Morgane Mininno et al.   JOURNAL OF BIOLOGICAL CHEMISTRY

Plant PRMTs Broaden the Scope of Arginine Methylation

(2012) Ayaz Ahmad et al.   Journal of Genetics and Genomics

A Method for Large-scale Identification of Protein Arginine Methylation

(2012) Thomas Uhlmann et al.   MOLECULAR & CELLULAR PROTEOMICS

Proteomic Analysis Reveals Diverse Classes of Arginine Methylproteins in Mitochondria of Trypanosomes

(2012) John C. Fisk et al.   MOLECULAR & CELLULAR PROTEOMICS

PLMLA: prediction of lysine methylation and lysine acetylation by combining multiple features

(2012) Shao-Ping Shi et al.   Molecular BioSystems

Complex evolutionary history and diverse domain organization of SET proteins suggest divergent regulatory interactions

(2012) Liangsheng Zhang et al.   NEW PHYTOLOGIST

SUBA3: a database for integrating experimentation and prediction to define the SUBcellular location of proteins in Arabidopsis

(2012) Sandra K. Tanz et al.   NUCLEIC ACIDS RESEARCH

The emerging roles of protein glutathionylation in chloroplasts

(2012) Mirko Zaffagnini et al.   PLANT SCIENCE

PMeS: Prediction of Methylation Sites Based on Enhanced Feature Encoding Scheme

(2012) Shao-Ping Shi et al.   PLoS One

The methylproteome and the intracellular methylation network

(2012) Melissa A. Erce et al.   PROTEOMICS

Methylation of translation-associated proteins in Saccharomyces cerevisiae: Identification of methylated lysines and their methyltransferases

(2012) Timothy A. Couttas et al.   PROTEOMICS

Lysine methylation of VCP by a member of a novel human protein methyltransferase family

(2012) Stefan Kernstock et al.   Nature Communications

AT_CHLORO: A Chloroplast Protein Database Dedicated to Sub-Plastidial Localization

(2012) Christophe Bruley et al.   Frontiers in Plant Science

Proteins of Diverse Function and Subcellular Location Are Lysine Acetylated in Arabidopsis

(2011) I. Finkemeier et al.   PLANT PHYSIOLOGY

Lysine Acetylation Is a Widespread Protein Modification for Diverse Proteins in Arabidopsis

(2011) X. Wu et al.   PLANT PHYSIOLOGY

Plastid Proteomics in Higher Plants: Current State and Future Goals

(2011) K. J. van Wijk et al.   PLANT PHYSIOLOGY

Identification of Essential Subunits in the Plastid-Encoded RNA Polymerase Complex Reveals Building Blocks for Proper Plastid Development

(2011) S. Steiner et al.   PLANT PHYSIOLOGY

Evidence for Network Evolution in an Arabidopsis Interactome Map

(2011) et al.   SCIENCE

Reversal of Histone Methylation: Biochemical and Molecular Mechanisms of Histone Demethylases

(2010) Nima Mosammaparast et al.   Annual Review of Biochemistry

Histone Methylation in Higher Plants

(2010) Chunyan Liu et al.   Annual Review of Plant Biology

Lysine methylation of nonhistone proteins is a way to regulate their stability and function

(2010) K. S. Egorova et al.   BIOCHEMISTRY-MOSCOW

Identification of arginine- and lysine-methylation in the proteome of Saccharomyces cerevisiae and its functional implications

(2010) Chi Pang et al.   BMC GENOMICS

AT_CHLORO, a Comprehensive Chloroplast Proteome Database with Subplastidial Localization and Curated Information on Envelope Proteins

(2010) Myriam Ferro et al.   MOLECULAR & CELLULAR PROTEOMICS

Uncovering the Human Methyltransferasome

(2010) Tanya C. Petrossian et al.   MOLECULAR & CELLULAR PROTEOMICS

Combining Machine Learning and Homology-Based Approaches to Accurately Predict Subcellular Localization in Arabidopsis

(2010) Rakesh Kaundal et al.   PLANT PHYSIOLOGY

Calmodulin methyltransferase is an evolutionarily conserved enzyme that trimethylates Lys-115 in calmodulin

(2010) Roberta Magnani et al.   Nature Communications

A toolbox for validation of mass spectrometry peptides identification and generation of database: IRMa

(2009) Véronique Dupierris et al.   BIOINFORMATICS

Incorporating structural characteristics for identification of protein methylation sites

(2009) Dray-Ming Shien et al.   JOURNAL OF COMPUTATIONAL CHEMISTRY

Protein Arginine Methylation in Mammals: Who, What, and Why

(2009) Mark T. Bedford et al.   MOLECULAR CELL

The Chloroplast Kinase Network: New Insights from Large-Scale Phosphoproteome Profiling

(2009) Sacha Baginsky et al.   Molecular Plant

Protein structure prediction on the Web: a case study using the Phyre server

(2009) Lawrence A Kelley et al.   Nature Protocols

ATXR5 and ATXR6 are H3K27 monomethyltransferases required for chromatin structure and gene silencing

(2009) Yannick Jacob et al.   NATURE STRUCTURAL & MOLECULAR BIOLOGY

Computational Identification of Protein Methylation Sites through Bi-Profile Bayes Feature Extraction

(2009) Jianlin Shao et al.   PLoS One

Regulation of DNMT1 stability through SET7-mediated lysine methylation in mammalian cells

(2009) P.-O. Esteve et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

The emerging field of dynamic lysine methylation of non-histone proteins

(2008) Jing Huang et al.   CURRENT OPINION IN GENETICS & DEVELOPMENT

Exploring CP12 binding proteins revealed aldolase as a new partner for the phosphoribulokinase/glyceraldehyde 3-phosphate dehydrogenase/CP12 complex - purification and kinetic characterization of this enzyme from Chlamydomonas reinhardtii

(2008) Jenny Erales et al.   FEBS Journal

Protein lysine methyltransferase G9a acts on non-histone targets

(2008) Philipp Rathert et al.   Nature Chemical Biology

PPDB, the Plant Proteomics Database at Cornell

(2008) Qi Sun et al.   NUCLEIC ACIDS RESEARCH

Sorting Signals, N-Terminal Modifications and Abundance of the Chloroplast Proteome

(2008) Boris Zybailov et al.   PLoS One