Complex evolutionary history and diverse domain organization of SET proteins suggest divergent regulatory interactions

SET domain proteins in plant development

(2011) Tage Thorstensen et al.   Biochimica et Biophysica Acta-Gene Regulatory Mechanisms

Characterization of a Novel Histone H3K36 Methyltransferase setd3 in Zebrafish

(2011) Dong-Wook KIM et al.   BIOSCIENCE BIOTECHNOLOGY AND BIOCHEMISTRY

Phylogenetics and evolution of Su(var)3-9 SET genes in land plants: rapid diversification in structure and function

(2011) Xinyu Zhu et al.   BMC EVOLUTIONARY BIOLOGY

Phylogenetic analysis and classification of the Brassica rapa SET-domain protein family

(2011) Yong Huang et al.   BMC PLANT BIOLOGY

Retrogenes in Rice (Oryza sativa L. ssp. japonica) Exhibit Correlated Expression with Their Source Genes

(2011) Hiroaki Sakai et al.   Genome Biology and Evolution

MEGA5: Molecular Evolutionary Genetics Analysis Using Maximum Likelihood, Evolutionary Distance, and Maximum Parsimony Methods

(2011) K. Tamura et al.   MOLECULAR BIOLOGY AND EVOLUTION

Ancestral polyploidy in seed plants and angiosperms

(2011) Yuannian Jiao et al.   NATURE

SET/MYND Lysine Methyltransferases Regulate Gene Transcription and Protein Activity

(2011) Kristin Leinhart et al.   Genes

Histone Methylation in Higher Plants

(2010) Chunyan Liu et al.   Annual Review of Plant Biology

Epigenetic regulation of development by histone lysine methylation

(2010) S Dambacher et al.   HEREDITY

Histone methyltransferases: regulation of transcription and contribution to human disease

(2010) Keisuke Nimura et al.   JOURNAL OF MOLECULAR MEDICINE-JMM

Cell-type specific analysis of translating RNAs in developing flowers reveals new levels of control

(2010) Yuling Jiao et al.   Molecular Systems Biology

Lysine methylation of the NF-κB subunit RelA by SETD6 couples activity of the histone methyltransferase GLP at chromatin to tonic repression of NF-κB signaling

(2010) Dan Levy et al.   NATURE IMMUNOLOGY

Arabidopsis SET DOMAIN GROUP2Is Required for H3K4 Trimethylation and Is Crucial for Both Sporophyte and Gametophyte Development

(2010) Alexandre Berr et al.   PLANT CELL

The transcriptome landscape of Arabidopsis male meiocytes from high-throughput sequencing: the complexity and evolution of the meiotic process

(2010) Hongxing Yang et al.   PLANT JOURNAL

Global Gene Profiling of Laser-Captured Pollen Mother Cells Indicates Molecular Pathways and Gene Subfamilies Involved in Rice Meiosis

(2010) X. Tang et al.   PLANT PHYSIOLOGY

SET DOMAIN GROUP2 is the major histone H3 lysine 4 trimethyltransferase in Arabidopsis

(2010) L. Guo et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Prdm9 Controls Activation of Mammalian Recombination Hotspots

(2010) E. D. Parvanov et al.   SCIENCE

PRDM9 Is a Major Determinant of Meiotic Recombination Hotspots in Humans and Mice

(2010) F. Baudat et al.   SCIENCE

PerM: efficient mapping of short sequencing reads with periodic full sensitive spaced seeds

(2009) Yangho Chen et al.   BIOINFORMATICS

Automated identification of conserved synteny after whole-genome duplication

(2009) J. M. Catchen et al.   GENOME RESEARCH

Genome-wide mapping of alternative splicing in Arabidopsis thaliana

(2009) S. A. Filichkin et al.   GENOME RESEARCH

Evolutionary Scenarios of Notch Proteins

(2009) A. Theodosiou et al.   MOLECULAR BIOLOGY AND EVOLUTION

Origin and Diversification of Basic-Helix-Loop-Helix Proteins in Plants

(2009) N. Pires et al.   MOLECULAR BIOLOGY AND EVOLUTION

The evolutionary significance of ancient genome duplications

(2009) Yves Van de Peer et al.   NATURE REVIEWS GENETICS

Evolution of F-box genes in plants: Different modes of sequence divergence and their relationships with functional diversification

(2009) Guixia Xu et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Elephant shark (Callorhinchus milii) provides insights into the evolution of Hox gene clusters in gnathostomes

(2009) V. Ravi et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Eukaryotic Protein Domains as Functional Units of Cellular Evolution

(2009) J. Jin et al.   Science Signaling

Accelerated Evolution of the Prdm9 Speciation Gene across Diverse Metazoan Taxa

(2009) Peter L. Oliver et al.   PLoS Genetics

Evolution of SET-domain protein families in the unicellular and multicellular Ascomycota fungi

(2008) Chendhore S Veerappan et al.   BMC EVOLUTIONARY BIOLOGY

Histone H3 lysine 4 trimethylation marks meiotic recombination initiation sites

(2008) Valérie Borde et al.   EMBO JOURNAL

Unraveling ancient hexaploidy through multiply-aligned angiosperm gene maps

(2008) H. Tang et al.   GENOME RESEARCH

Ezh1 and Ezh2 Maintain Repressive Chromatin through Different Mechanisms

(2008) Raphael Margueron et al.   MOLECULAR CELL

Genome-Wide Survey and Developmental Expression Mapping of Zebrafish SET Domain-Containing Genes

(2008) Xiao-Jian Sun et al.   PLoS One

Synteny and Collinearity in Plant Genomes

(2008) H. Tang et al.   SCIENCE