Pleistocene Speciation in North American Lichenized Fungi and the Impact of Alternative Species Circumscriptions and Rates of Molecular Evolution on Divergence Estimates
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Title
Pleistocene Speciation in North American Lichenized Fungi and the Impact of Alternative Species Circumscriptions and Rates of Molecular Evolution on Divergence Estimates
Authors
Keywords
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Journal
PLoS One
Volume 8, Issue 12, Pages e85240
Publisher
Public Library of Science (PLoS)
Online
2013-12-27
DOI
10.1371/journal.pone.0085240
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Note: Only part of the references are listed.- Local representation of global diversity in a cosmopolitan lichen-forming fungal species complex (Rhizoplaca, Ascomycota)
- (2013) Steven D. Leavitt et al. JOURNAL OF BIOGEOGRAPHY
- Pleistocene expansion of the bipolar lichenCetraria aculeatainto the Southern hemisphere
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- Neogene-dominated diversification in neotropical montane lichens: Dating divergence events in the lichen-forming fungal genus Oropogon (Parmeliaceae)
- (2012) Steven D. Leavitt et al. AMERICAN JOURNAL OF BOTANY
- Diversification of the newly recognized lichen-forming fungal lineage Montanelia (Parmeliaceae, Ascomycota) and its relation to key geological and climatic events
- (2012) Pradeep K. Divakar et al. AMERICAN JOURNAL OF BOTANY
- Extreme phenotypic variation in Cetraria aculeata (lichenized Ascomycota): adaptation or incidental modification?
- (2012) Sergio Pérez-Ortega et al. ANNALS OF BOTANY
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- (2012) Steven D. Leavitt et al. BIOLOGICAL JOURNAL OF THE LINNEAN SOCIETY
- Miocene and Pliocene dominated diversification of the lichen-forming fungal genus Melanohalea (Parmeliaceae, Ascomycota) and Pleistocene population expansions
- (2012) Steven D Leavitt et al. BMC EVOLUTIONARY BIOLOGY
- SPECIES DELIMITATION WITH ABC AND OTHER COALESCENT-BASED METHODS: A TEST OF ACCURACY WITH SIMULATIONS AND AN EMPIRICAL EXAMPLE WITH LIZARDS OF THE LIOLAEMUS DARWINII COMPLEX (SQUAMATA: LIOLAEMIDAE)
- (2012) Arley Camargo et al. EVOLUTION
- Concatenation and Concordance in the Reconstruction of Mouse Lemur Phylogeny: An Empirical Demonstration of the Effect of Allele Sampling in Phylogenetics
- (2012) David W. Weisrock et al. MOLECULAR BIOLOGY AND EVOLUTION
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- (2012) Eric M. O'Neill et al. MOLECULAR ECOLOGY
- Genome-wide RAD sequence data provide unprecedented resolution of species boundaries and relationships in the Lake Victoria cichlid adaptive radiation
- (2012) Catherine E. Wagner et al. MOLECULAR ECOLOGY
- Diversification in North American arid lands: Niche conservatism, divergence and expansion of habitat explain speciation in the genus Ephedra
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- A review of the lichen family Parmeliaceae - history, phylogeny and current taxonomy
- (2012) Arne Thell et al. NORDIC JOURNAL OF BOTANY
- Transoceanic Dispersal and Subsequent Diversification on Separate Continents Shaped Diversity of the Xanthoparmelia pulla Group (Ascomycota)
- (2012) Guillermo Amo de Paz et al. PLoS One
- Is Recombination a Problem for Species-Tree Analyses?
- (2012) Hayley C. Lanier et al. SYSTEMATIC BIOLOGY
- Coalescent-based species delimitation in an integrative taxonomy
- (2012) Matthew K. Fujita et al. TRENDS IN ECOLOGY & EVOLUTION
- Species delimitation and evolution in morphologically and chemically diverse communities of the lichen-forming genus Xanthoparmelia (Parmeliaceae, Ascomycota) in western North America
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- Goodbye morphology? A paradigm shift in the delimitation of species in lichenized fungi
- (2011) H. Thorsten Lumbsch et al. FUNGAL DIVERSITY
- Population structure of mycobionts and photobionts of the widespread lichen Cetraria aculeata
- (2011) F. FERNÁNDEZ-MENDOZA et al. MOLECULAR ECOLOGY
- Species delimitation in taxonomically difficult lichen-forming fungi: An example from morphologically and chemically diverse Xanthoparmelia (Parmeliaceae) in North America
- (2011) Steven D. Leavitt et al. MOLECULAR PHYLOGENETICS AND EVOLUTION
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