Neogene-dominated diversification in neotropical montane lichens: Dating divergence events in the lichen-forming fungal genus Oropogon (Parmeliaceae)

Discovery of cryptic species among North American pine-feedingChionaspisscale insects (Hemiptera: Diaspididae)

(2012) RODGER A. GWIAZDOWSKI et al.   BIOLOGICAL JOURNAL OF THE LINNEAN SOCIETY

Strong mitochondrial DNA support for a Cretaceous origin of modern avian lineages

(2012) Joseph W Brown et al.   BMC BIOLOGY

Miocene and Pliocene dominated diversification of the lichen-forming fungal genus Melanohalea (Parmeliaceae, Ascomycota) and Pleistocene population expansions

(2012) Steven D Leavitt et al.   BMC EVOLUTIONARY BIOLOGY

Nuclear ribosomal internal transcribed spacer (ITS) region as a universal DNA barcode marker for Fungi

(2012) C. L. Schoch et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Is Recombination a Problem for Species-Tree Analyses?

(2012) Hayley C. Lanier et al.   SYSTEMATIC BIOLOGY

Species delimitation and evolution in morphologically and chemically diverse communities of the lichen-forming genus Xanthoparmelia (Parmeliaceae, Ascomycota) in western North America

(2011) Steven D. Leavitt et al.   AMERICAN JOURNAL OF BOTANY

PICS-Ord: unlimited coding of ambiguous regions by pairwise identity and cost scores ordination

(2011) Robert Lücking et al.   BMC BIOINFORMATICS

Goodbye morphology? A paradigm shift in the delimitation of species in lichenized fungi

(2011) H. Thorsten Lumbsch et al.   FUNGAL DIVERSITY

Recent origin, active speciation and dispersal for the lichen genus Nephroma (Peltigerales) in Macaronesia

(2011) Emmanuël Sérusiaux et al.   JOURNAL OF BIOGEOGRAPHY

Conundrums in species concepts: the discovery of a new cryptic species segregated from Parmelina tiliacea (Ascomycota: Parmeliaceae)

(2011) Jano NÚÑEZ-ZAPATA et al.   LICHENOLOGIST

Parmelia sulcata (Ascomycota: Parmeliaceae), a sympatric monophyletic species complex

(2011) Maria del Carmen MOLINA et al.   LICHENOLOGIST

Population structure of mycobionts and photobionts of the widespread lichen Cetraria aculeata

(2011) F. FERNÁNDEZ-MENDOZA et al.   MOLECULAR ECOLOGY

Species delimitation in taxonomically difficult lichen-forming fungi: An example from morphologically and chemically diverse Xanthoparmelia (Parmeliaceae) in North America

(2011) Steven D. Leavitt et al.   MOLECULAR PHYLOGENETICS AND EVOLUTION

Complex patterns of speciation in cosmopolitan “rock posy” lichens – Discovering and delimiting cryptic fungal species in the lichen-forming Rhizoplaca melanophthalma species-complex (Lecanoraceae, Ascomycota)

(2011) Steven D. Leavitt et al.   MOLECULAR PHYLOGENETICS AND EVOLUTION

Single origin and subsequent diversification of central Andean endemic Umbilicaria species

(2011) Geir Hestmark et al.   MYCOLOGIA

Another example of cryptic diversity in lichen-forming fungi: the new species Parmelia mayi (Ascomycota: Parmeliaceae)

(2011) M. Carmen Molina et al.   ORGANISMS DIVERSITY & EVOLUTION

Pleistocene Climate, Phylogeny, and Climate Envelope Models: An Integrative Approach to Better Understand Species' Response to Climate Change

(2011) A. Michelle Lawing et al.   PLoS One

Origin and Diversification of Major Clades in Parmelioid Lichens (Parmeliaceae, Ascomycota) during the Paleogene Inferred by Bayesian Analysis

(2011) Guillermo Amo de Paz et al.   PLoS One

Accuracy and Precision of Species Trees: Effects of Locus, Individual, and Base Pair Sampling on Inference of Species Trees in Lizards of the Liolaemus darwinii Group (Squamata, Liolaemidae)

(2011) Arley Camargo et al.   SYSTEMATIC BIOLOGY

SATé-II: Very Fast and Accurate Simultaneous Estimation of Multiple Sequence Alignments and Phylogenetic Trees

(2011) Kevin Liu et al.   SYSTEMATIC BIOLOGY

Molecular phylogeny and systematics of Neotropical toucanets in the genus Aulacorhynchus (Aves, Ramphastidae)

(2011) Elisa Bonaccorso et al.   ZOOLOGICA SCRIPTA

Cryptic species in lichen-forming fungi

(2011) Ana Crespo et al.   IMA Fungus

Phylogeography and divergence date estimates of a lichen species complex with a disjunct distribution pattern

(2010) Mónica A. G. Otálora et al.   AMERICAN JOURNAL OF BOTANY

Remototrachyna , a newly recognized tropical lineage of lichens in the Hypotrachyna clade (Parmeliaceae, Ascomycota), originated in the Indian subcontinent

(2010) Pradeep K. Divakar et al.   AMERICAN JOURNAL OF BOTANY

Cryptic species and species pairs in lichens: A discussion on the relationship between molecular phylogenies and morphological characters

(2010) Ana Crespo et al.   ANALES DEL JARDIN BOTANICO DE MADRID

CALIBRATING DIVERGENCE TIMES ON SPECIES TREES VERSUS GENE TREES: IMPLICATIONS FOR SPECIATION HISTORY OF APHELOCOMA JAYS

(2010) John E. McCormack et al.   EVOLUTION

Molecular phylogenetic studies reveal an undescribed species within the North American concept of Melanelixia glabra (Parmeliaceae)

(2010) Pradeep K. Divakar et al.   FUNGAL DIVERSITY

Recent Trends in Molecular Phylogenetic Analysis: Where to Next?

(2010) C. Blair et al.   JOURNAL OF HEREDITY

Contrasting plant diversification histories within the Andean biodiversity hotspot

(2010) R. T. Pennington et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Phylogenetic assessment of alignments reveals neglected tree signal in gaps

(2010) Christophe Dessimoz et al.   GENOME BIOLOGY

Dating the molecular clock in fungi – how close are we?

(2010) Mary L. Berbee et al.   Fungal Biology Reviews

Phylogenetic inference under varying proportions of indel-induced alignment gaps

(2009) Bhakti Dwivedi et al.   BMC EVOLUTIONARY BIOLOGY

Ecological Change, Range Fluctuations and Population Dynamics during the Pleistocene

(2009) Michael Hofreiter et al.   CURRENT BIOLOGY

Do the Oaxacan Highlands represent a natural biotic unit? A cladistic biogeographical test based on vertebrate taxa

(2009) Livia León Paniagua et al.   JOURNAL OF BIOGEOGRAPHY

Molecular data show that Bryoria fremontii and B. tortuosa ( Parmeliaceae) are conspecific

(2009) Saara VELMALA et al.   LICHENOLOGIST

Bayesian Inference of Species Trees from Multilocus Data

(2009) J. Heled et al.   MOLECULAR BIOLOGY AND EVOLUTION

Coalescent methods for estimating phylogenetic trees

(2009) Liang Liu et al.   MOLECULAR PHYLOGENETICS AND EVOLUTION

Fungi evolved right on track

(2009) Robert Lücking et al.   MYCOLOGIA

Explosive Pleistocene diversification and hemispheric expansion of a “great speciator”

(2009) Robert G. Moyle et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Rapid and Accurate Large-Scale Coestimation of Sequence Alignments and Phylogenetic Trees

(2009) K. Liu et al.   SCIENCE

Species Tree Discordance Traces to Phylogeographic Clade Boundaries in North American Fence Lizards (Sceloporus)

(2009) Adam D. Leaché   SYSTEMATIC BIOLOGY

Accelerated Species Inventory on Madagascar Using Coalescent-Based Models of Species Delineation

(2009) Michael T. Monaghan et al.   SYSTEMATIC BIOLOGY

Estimating Species Trees: Methods of Phylogenetic Analysis When There Is Incongruence across Genes

(2009) L. Lacey Knowles   SYSTEMATIC BIOLOGY

Triterpene chemosyndromes and subtle morphological characters characterise lineages in thePhyscia aipoliagroup in Australia (Ascomycota)

(2009) John A. Elix et al.   SYSTEMATICS AND BIODIVERSITY

Molecular data show that Topeliopsis (Ascomycota, Thelotremataceae) is polyphyletic

(2008) Armin MANGOLD et al.   LICHENOLOGIST

jModelTest: Phylogenetic Model Averaging

(2008) D. Posada   MOLECULAR BIOLOGY AND EVOLUTION

Speciation timing and neotropical biodiversity: the Tertiary-Quaternary debate in the light of molecular phylogenetic evidence

(2008) VALENTÍ RULL   MOLECULAR ECOLOGY

An early Cenozoic perspective on greenhouse warming and carbon-cycle dynamics

(2008) James C. Zachos et al.   NATURE

A Rapid Bootstrap Algorithm for the RAxML Web Servers

(2008) Alexandros Stamatakis et al.   SYSTEMATIC BIOLOGY

Phylogenetic patterns of morphological and chemical characters and reproductive mode in theHeterodermia obscuratagroup in Costa Rica (Ascomycota, Physciaceae)

(2008) Robert Lücking et al.   SYSTEMATICS AND BIODIVERSITY

Phylogeography across a continent: The evolutionary and demographic history of the North American racer (Serpentes: Colubridae: Coluber constrictor)

(2007) Frank T. Burbrink et al.   MOLECULAR PHYLOGENETICS AND EVOLUTION

The delimitation of Antarctic and bipolar species of neuropogonoid Usnea (Ascomycota, Lecanorales): a cohesion approach of species recognition for the Usnea perpusilla complex

(2007) Nora Wirtz et al.