Miocene and Pliocene dominated diversification of the lichen-forming fungal genus Melanohalea (Parmeliaceae, Ascomycota) and Pleistocene population expansions

Strong mitochondrial DNA support for a Cretaceous origin of modern avian lineages

(2012) Joseph W Brown et al.   BMC BIOLOGY

Species delimitation and evolution in morphologically and chemically diverse communities of the lichen-forming genus Xanthoparmelia (Parmeliaceae, Ascomycota) in western North America

(2011) Steven D. Leavitt et al.   AMERICAN JOURNAL OF BOTANY

Large scale mitochondrial sequencing in Mexican Americans suggests a reappraisal of Native American origins

(2011) Satish Kumar et al.   BMC EVOLUTIONARY BIOLOGY

DIVERSITY AND DEMOGRAPHY IN BERINGIA: MULTILOCUS TESTS OF PALEODISTRIBUTION MODELS REVEAL THE COMPLEX HISTORY OF ARCTIC GROUND SQUIRRELS

(2011) Kurt E. Galbreath et al.   EVOLUTION

Population structure of mycobionts and photobionts of the widespread lichen Cetraria aculeata

(2011) F. FERNÁNDEZ-MENDOZA et al.   MOLECULAR ECOLOGY

Species delimitation in taxonomically difficult lichen-forming fungi: An example from morphologically and chemically diverse Xanthoparmelia (Parmeliaceae) in North America

(2011) Steven D. Leavitt et al.   MOLECULAR PHYLOGENETICS AND EVOLUTION

Complex patterns of speciation in cosmopolitan “rock posy” lichens – Discovering and delimiting cryptic fungal species in the lichen-forming Rhizoplaca melanophthalma species-complex (Lecanoraceae, Ascomycota)

(2011) Steven D. Leavitt et al.   MOLECULAR PHYLOGENETICS AND EVOLUTION

Parallel evolution and phenotypic divergence in lichenized fungi: A case study in the lichen-forming fungal family Graphidaceae (Ascomycota: Lecanoromycetes: Ostropales)

(2011) Eimy Rivas Plata et al.   MOLECULAR PHYLOGENETICS AND EVOLUTION

DNA barcoding of lichenized fungi demonstrates high identification success in a floristic context

(2011) Laura J. Kelly et al.   NEW PHYTOLOGIST

Another example of cryptic diversity in lichen-forming fungi: the new species Parmelia mayi (Ascomycota: Parmeliaceae)

(2011) M. Carmen Molina et al.   ORGANISMS DIVERSITY & EVOLUTION

Origin and Diversification of Major Clades in Parmelioid Lichens (Parmeliaceae, Ascomycota) during the Paleogene Inferred by Bayesian Analysis

(2011) Guillermo Amo de Paz et al.   PLoS One

Cryptic species in lichen-forming fungi

(2011) Ana Crespo et al.   IMA Fungus

Phylogeography and divergence date estimates of a lichen species complex with a disjunct distribution pattern

(2010) Mónica A. G. Otálora et al.   AMERICAN JOURNAL OF BOTANY

Remototrachyna , a newly recognized tropical lineage of lichens in the Hypotrachyna clade (Parmeliaceae, Ascomycota), originated in the Indian subcontinent

(2010) Pradeep K. Divakar et al.   AMERICAN JOURNAL OF BOTANY

CALIBRATING DIVERGENCE TIMES ON SPECIES TREES VERSUS GENE TREES: IMPLICATIONS FOR SPECIATION HISTORY OF APHELOCOMA JAYS

(2010) John E. McCormack et al.   EVOLUTION

Genetic distances within and among species in monophyletic lineages of Parmeliaceae (Ascomycota) as a tool for taxon delimitation

(2010) Ruth Del-Prado et al.   MOLECULAR PHYLOGENETICS AND EVOLUTION

DnaSP v5: a software for comprehensive analysis of DNA polymorphism data

(2009) P. Librado et al.   BIOINFORMATICS

WHEN COLD IS BETTER: CLIMATE-DRIVEN ELEVATION SHIFTS YIELD COMPLEX PATTERNS OF DIVERSIFICATION AND DEMOGRAPHY IN AN ALPINE SPECIALIST (AMERICAN PIKA,OCHOTONA PRINCEPS)

(2009) Kurt E. Galbreath et al.   EVOLUTION

ASSESSING REPRODUCTIVE ISOLATION IN HIGHLY DIVERSE COMMUNITIES OF THE LICHEN-FORMING FUNGAL GENUSPELTIGERA

(2009) Heath E. O'Brien et al.   EVOLUTION

Bayesian Inference of Species Trees from Multilocus Data

(2009) J. Heled et al.   MOLECULAR BIOLOGY AND EVOLUTION

Coalescent methods for estimating phylogenetic trees

(2009) Liang Liu et al.   MOLECULAR PHYLOGENETICS AND EVOLUTION

Fungi evolved right on track

(2009) Robert Lücking et al.   MYCOLOGIA

New primers for promising single-copy genes in fungal phylogenetics and systematics

(2009) I. Schmitt et al.   PERSOONIA

Explosive Pleistocene diversification and hemispheric expansion of a “great speciator”

(2009) Robert G. Moyle et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Estimating Species Trees: Methods of Phylogenetic Analysis When There Is Incongruence across Genes

(2009) L. Lacey Knowles   SYSTEMATIC BIOLOGY

IS A NEW AND GENERAL THEORY OF MOLECULAR SYSTEMATICS EMERGING?

(2008) Scott V. Edwards   EVOLUTION

Intragenomic Variation of Fungal Ribosomal Genes Is Higher than Previously Thought

(2008) U. K. Simon et al.   MOLECULAR BIOLOGY AND EVOLUTION

jModelTest: Phylogenetic Model Averaging

(2008) D. Posada   MOLECULAR BIOLOGY AND EVOLUTION

Recent colonization and radiation of North American Lycaeides (Plebejus) inferred from mtDNA

(2008) Zachariah Gompert et al.   MOLECULAR PHYLOGENETICS AND EVOLUTION

An early Cenozoic perspective on greenhouse warming and carbon-cycle dynamics

(2008) James C. Zachos et al.   NATURE

A Rapid Bootstrap Algorithm for the RAxML Web Servers

(2008) Alexandros Stamatakis et al.   SYSTEMATIC BIOLOGY

Phylogeography across a continent: The evolutionary and demographic history of the North American racer (Serpentes: Colubridae: Coluber constrictor)

(2007) Frank T. Burbrink et al.   MOLECULAR PHYLOGENETICS AND EVOLUTION

The delimitation of Antarctic and bipolar species of neuropogonoid Usnea (Ascomycota, Lecanorales): a cohesion approach of species recognition for the Usnea perpusilla complex

(2007) Nora Wirtz et al.